Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03505 ATGGAGACAAGAAGGTCAGAGGGCAAGAGAAGTTTGAGATACAAAGAAGAGGTGGATGATTCTCAATATGAGGAAGAAGATGAAGATGATATGGATTTTGAAGAGGAAGAGGATGGTAGAAGGAAGAGGGTAGTAACAGATCTCTATAGCAACAAGAGAGGTTCTAACAAAGCTGGTGGCTCAAATATTACACCTTGTTGTCAAGTTGAGAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTATCATCGGAGACATAAGGTTTGTGAGTATCATGCTAAGGCACCTGCCGTACACATTGCAGGGATGCAGCAAAGGTTTTGTCAGCAATGTAGCAGATTCCACGAGCTATCCGAATTTGATGACACAAAAAGGAGTTGTAGAAGGCGTTTGGCCGGACATAATGAGAGGCGTCGCAAAAATGCAAGTGATTATCAAGGAGAATAA 447 0.4228 METRRSEGKRSLRYKEEVDDSQYEEEDEDDMDFEEEEDGRRKRVVTDLYSNKRGSNKAGGSNITPCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIAGMQQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNASDYQGE 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03505 148 SUPERFAMILY SBT domain 65 144 IPR036893 GO:0003677|GO:0005634
Trre7g03505 148 Gene3D - 57 128 IPR036893 GO:0003677|GO:0005634
Trre7g03505 148 Pfam SBP domain 67 140 IPR004333 GO:0003677
Trre7g03505 148 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 142 IPR044817 GO:0003677
Trre7g03505 148 PIRSF SBP 1 148 IPR017238 GO:0003677|GO:0003700|GO:0009908
Trre7g03505 148 MobiDBLite consensus disorder prediction 1 41 - -
Trre7g03505 148 FunFam Squamosa promoter-binding-like protein 14 58 128 - -
Trre7g03505 148 MobiDBLite consensus disorder prediction 1 19 - -
Trre7g03505 148 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Trre7g03505 148 MobiDBLite consensus disorder prediction 20 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03505 Trre-Chr7 41511806 41516112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03505 57 144 SBP-box Gene Family AT2G33810 69.318 1.58e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre7g03505 SBP 4.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03505 - - gmx:100527199 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03505 7 41511806 41516112 Trre3g00489 3 3270009 3272105 PCT