Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03503 ATGTCAGAAAACAAGAGTTCTCAAGAGAATAATCTCAAACAAAATGAGAAGATTGAGAATCATATCAACAACCATGAGATTCCTAAAAATGAAGCTGAAAATCAAAAGTGTTCTCATGAGGAGTCTCTCGAAGAAAATGAGGAGATCCAACAGATAAACAACCTGCAAGAGCAATTCGAAAATGAAGTTGTAGAATCAGAACAAATGCATACATCCAACATTGAAGAAGATTATGATGGTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATATGTGGAGATAGATTTATCAAAGTTAAAGGATCTTAATTGTCCTATTTGCAATGGAATTATTAGAAAAACAAAAACTATAAAGGAATGCCTTCACCGATTTTGTAGAGATTGTGTAGACGTTTATATCAGCAAGGGTAACAAAAAATGTCCTCTTTGTTTTACACATTTTGTTGACCAAAGTTCCATTATATACGATAAAGAGTATGATGTCTTAATTGCTGCATTATATCCGGATATTGAAAAGGTTAAGAAAGAGTCACCTATTGTGGAAGAATCTAATAAAGGACCAAGAATAGTTGTTGATGAAACTGATCCAGGCGAAGAACCAATTGCTATGGAAAAACCAATTGTTGAAGAATCTGATGATGATACTGCATCAACTCTGCAAAGTAACAAAGACAGGCCAACAAAGAAATAA 696 0.3319 MSENKSSQENNLKQNEKIENHINNHEIPKNEAENQKCSHEESLEENEEIQQINNLQEQFENEVVESEQMHTSNIEEDYDGKEEEEEEEEEEEYVEIDLSKLKDLNCPICNGIIRKTKTIKECLHRFCRDCVDVYISKGNKKCPLCFTHFVDQSSIIYDKEYDVLIAALYPDIEKVKKESPIVEESNKGPRIVVDETDPGEEPIAMEKPIVEESDDDTASTLQSNKDRPTKK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03503 231 Pfam Zinc finger, C3HC4 type (RING finger) 105 145 - -
Trre7g03503 231 MobiDBLite consensus disorder prediction 1 91 - -
Trre7g03503 231 SUPERFAMILY RING/U-box 94 154 - -
Trre7g03503 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 176 IPR013083 -
Trre7g03503 231 MobiDBLite consensus disorder prediction 10 46 - -
Trre7g03503 231 ProSitePatterns Zinc finger RING-type signature. 122 131 IPR017907 -
Trre7g03503 231 MobiDBLite consensus disorder prediction 48 68 - -
Trre7g03503 231 Coils Coil 71 91 - -
Trre7g03503 231 ProSiteProfiles Zinc finger RING-type profile. 106 145 IPR001841 -
Trre7g03503 231 Coils Coil 42 69 - -
Trre7g03503 231 MobiDBLite consensus disorder prediction 180 231 - -
Trre7g03503 231 PANTHER OS11G0578200 PROTEIN 4 184 IPR044592 -
Trre7g03503 231 SMART ring_2 106 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03503 Trre-Chr7 41466027 41468708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03503 104 145 C3H Transcription Factor Family AT3G23060 44.186 6.47e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03503 K10695 - rcu:8258442 124.405