Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03502 ATGCCGTCACAGAAGCGTTCTTTCGATGAGACTCTCGAAGAAAATGAAGAAGAGTCTGAGAACGAAATGAACAGCCAGGAGCAACCTAACGATGAAGACGAATCAGATCAGAGCCATTCATCTGATAGTGACGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAAACGAAGATGAAGACGAAGAATTTGTGGCTGTAAAATTGTCAGATGTACGCAAGGAAGTTCAGTGTCCTATCTGCCTTGGCATCATTCGAAAAACAAGAACCGTAATGGAGTGCTTACATCGCTTTTGCAGAGAGTGCATAGACAAATCGATGCGTCTTGGTAACAATGAATGTCCCGCTTGCCGTACACATTGTGCTAGCCGACGCTCTCTTAGAGATGACCCAAACTTTGATACTTTGATTGCTGCTATCTATCCAGATATTGATAAGTATGAGGAAGAGGAATTGGCTTTGCATGAGGATGAGCTGGCTCGCCATAAGCAGTTCCAAGCATCCATTGCCCAAACGCTACAACGGCAATCTGAAGCATTGAGTAAGAAACGAAATCCCAAAGCAACAGCAGTGGCGTTTGTGAGGAGATCACAAGGCAACTATCGAACTTCACATCTGAGACGCCGAAGAAACTTCAGAAATGCCGGTGACTTTCAGGTATCCAATGACAACAAGGGTATGAATGATAATGATAGGGGAAAGGACTCATCTTCTGATGATGGGCTGACAGAAACCCAGCCAAGAAGATGCAGAAGAGGTGGAGAACAAGAAGCACAAGCTCCTCAGCAGTCTGCCTCTACTGATCCAGATGGAGTTGGTGAAGAAAATACTCCAGAAGTAAATAGAGACATCATAAGTGCATCTGGTACACTTTCCTGGGGGAAAAATGGTCACCGGAGTCACAACCGAGTCAATGGAAAGAATGCCAAATGCAGTCGCATCTCCAAATTGGTTGAACATCTTCGCACCCCGGGAGCAAATGATTATGAGCTGCCTGCCTTTCTCATGCTTGTCTCGTTTGATGAGCAAAAAATGCCAAGCTTAAAGGATCCATACCTTACTTGCGAGCCTACTATGTCAGTTGAGAAACTACGCAAGCTTGTTGCAAATGAAACTGCACTGCCTGTGGATGAAGTTGAGTTGTGGTCGGTACTAAAGCCACGGACTAACATTGTAGATGGTGAAAGAACCGTTGATCCAGACAGAGATAATTTACGCGTTCTAGACGACCAAGAAACATTGGCTGAATTGATGAGAGATTATGAAAATACCAGCTATGGTTATCTGGTCATGGCTTACAAGAGGAAGTTGCAGAATTCAGACACAATTGGGTTAAGCTGA 1344 0.442 MPSQKRSFDETLEENEEESENEMNSQEQPNDEDESDQSHSSDSDEEEEEEEEDEEEENEDEDEEFVAVKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDTLIAAIYPDIDKYEEEELALHEDELARHKQFQASIAQTLQRQSEALSKKRNPKATAVAFVRRSQGNYRTSHLRRRRNFRNAGDFQVSNDNKGMNDNDRGKDSSSDDGLTETQPRRCRRGGEQEAQAPQQSASTDPDGVGEENTPEVNRDIISASGTLSWGKNGHRSHNRVNGKNAKCSRISKLVEHLRTPGANDYELPAFLMLVSFDEQKMPSLKDPYLTCEPTMSVEKLRKLVANETALPVDEVELWSVLKPRTNIVDGERTVDPDRDNLRVLDDQETLAELMRDYENTSYGYLVMAYKRKLQNSDTIGLS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03502 447 SUPERFAMILY RING/U-box 63 150 - -
Trre7g03502 447 PANTHER OS11G0578200 PROTEIN 4 439 IPR044592 -
Trre7g03502 447 MobiDBLite consensus disorder prediction 258 272 - -
Trre7g03502 447 MobiDBLite consensus disorder prediction 228 256 - -
Trre7g03502 447 Coils Coil 41 64 - -
Trre7g03502 447 SMART ring_2 79 118 IPR001841 -
Trre7g03502 447 MobiDBLite consensus disorder prediction 289 308 - -
Trre7g03502 447 MobiDBLite consensus disorder prediction 13 65 - -
Trre7g03502 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 142 IPR013083 -
Trre7g03502 447 ProSiteProfiles Zinc finger RING-type profile. 79 119 IPR001841 -
Trre7g03502 447 MobiDBLite consensus disorder prediction 1 65 - -
Trre7g03502 447 ProSitePatterns Zinc finger RING-type signature. 95 104 IPR017907 -
Trre7g03502 447 MobiDBLite consensus disorder prediction 177 278 - -
Trre7g03502 447 CDD RING-HC_RING1-like 76 141 - -
Trre7g03502 447 Pfam Zinc finger, C3HC4 type (RING finger) 78 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03502 Trre-Chr7 41446214 41451966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03502 72 142 C3H Transcription Factor Family AT3G23060 35.135 8.37e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03502 K10695 - qsu:112040979 430.254