Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03492 ATGAAAAAAAAGAAATACCTAGCACACACTTTACCAGAAAAATTCAAGATGCAAATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTTGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATCACTTTGGAGGTTGAGAGCTCAGACACAATTGACAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGATCAGCAAAGATTGATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTAAGGGGAGGTATGCAGATCTTTGTGAAGACATTGACAGGTAAGACCATTACTTTGGAGGTAGAGAACTCAGATACGATTGACAATGTGAAGGTTAAGATACAAGACAAAGAGGGTATCCCTCCAGACCAACAGAGGCTAATTTTTGCTGGAGAGCAGCTTGAAGATGGCAGAACTCTTGCTGATTATAACATTCAGAAAGAGTCCACCCTTCACCTTGTTCTTCGTTTGAGAGGAGGTATGCAAATCTTTGTGAAGACGCTGACTGGAAAGACCATTACCTTGGAGGTAGAAAGTTCGGACATTGATAATGTGAAGGTAAAAATACAGGATTGA 828 0.4287 MKKKKYLAHTLPEKFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVENSDTIDNVKVKIQDKEGIPPDQQRLIFAGEQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDIDNVKVKIQD 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03492 275 ProSiteProfiles Ubiquitin domain profile. 169 244 IPR000626 GO:0005515
Trre7g03492 275 Gene3D - 245 275 - -
Trre7g03492 275 FunFam Polyubiquitin-C 245 275 - -
Trre7g03492 275 ProSitePatterns Ubiquitin domain signature. 119 144 IPR019954 -
Trre7g03492 275 SUPERFAMILY Ubiquitin-like 92 168 IPR029071 -
Trre7g03492 275 SUPERFAMILY Ubiquitin-like 12 92 IPR029071 -
Trre7g03492 275 FunFam Polyubiquitin Ubiquitin 169 244 - -
Trre7g03492 275 ProSitePatterns Ubiquitin domain signature. 43 68 IPR019954 -
Trre7g03492 275 FunFam Polyubiquitin 3 17 92 - -
Trre7g03492 275 PANTHER UBIQUITIN 245 275 - -
Trre7g03492 275 CDD Ubl_ubiquitin 17 92 - -
Trre7g03492 275 Gene3D - 169 244 - -
Trre7g03492 275 Gene3D - 9 93 - -
Trre7g03492 275 Gene3D - 94 168 - -
Trre7g03492 275 SUPERFAMILY Ubiquitin-like 167 244 IPR029071 -
Trre7g03492 275 PRINTS Ubiquitin signature 69 90 IPR019956 -
Trre7g03492 275 PRINTS Ubiquitin signature 48 68 IPR019956 -
Trre7g03492 275 PRINTS Ubiquitin signature 27 47 IPR019956 -
Trre7g03492 275 CDD Ubl_ubiquitin 93 168 - -
Trre7g03492 275 Pfam Ubiquitin family 95 166 IPR000626 GO:0005515
Trre7g03492 275 Pfam Ubiquitin family 19 90 IPR000626 GO:0005515
Trre7g03492 275 Pfam Ubiquitin family 171 242 IPR000626 GO:0005515
Trre7g03492 275 ProSiteProfiles Ubiquitin domain profile. 93 168 IPR000626 GO:0005515
Trre7g03492 275 CDD Ubl_ubiquitin 169 244 - -
Trre7g03492 275 ProSiteProfiles Ubiquitin domain profile. 17 92 IPR000626 GO:0005515
Trre7g03492 275 FunFam Polyubiquitin 3 93 168 - -
Trre7g03492 275 ProSitePatterns Ubiquitin domain signature. 195 220 IPR019954 -
Trre7g03492 275 SMART ubq_7 17 88 IPR000626 GO:0005515
Trre7g03492 275 SMART ubq_7 169 240 IPR000626 GO:0005515
Trre7g03492 275 SMART ubq_7 93 164 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03492 Trre-Chr7 41293963 41296482 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03492 17 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 4.66e-49 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03492 - K08770 pavi:110774095 496.508