Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03490 ATGTTTATTGGAAGAGCTTTCCTTTTGCTGAAAAGAAGAGAAATTCGTAGAACACAAAATCGCTTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATTACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCATCTTTGCTGGAAAACAGCTTGAGGATGGTCGGACTTTAGCTGATTACAACATTCAGAAAGAATCTACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGTATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAAGTGGAGAGTTCTGACACCATAGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGAATTCCTCCAGACCAGCAGAAGTTGATTTTTGCAGGAAAGCAGCTCGAAGATGGCAGAACCCTGGCTGATTATAACATCCAGAAAGAGTCAACACTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTCGTGAAAACGCTTACTGGTAAGACAATAACTTTGGAGGTTGAGAGCTCAGACACGATTGACAATGTGAAGGCTAAGATACAGGACAAGGAGGGCATTCCTCCGGATCAGCAAAGGTTGATTTTTGCCGGAAAGCAGCTCGAAGATGGGCGTACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTCTGAGGGGAGGGATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTAGAAAGTTCAGATACGATCGATAATGTGAAAGCAAAAATACAGGACAAAGAGGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTAGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGCCTTCGTGGTGGATTTTAA 987 0.4468 MFIGRAFLLLKRREIRRTQNRFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03490 328 CDD Ubl_ubiquitin 252 327 - -
Trre7g03490 328 FunFam Polyubiquitin 3 176 251 - -
Trre7g03490 328 Pfam Ubiquitin family 254 325 IPR000626 GO:0005515
Trre7g03490 328 Pfam Ubiquitin family 26 97 IPR000626 GO:0005515
Trre7g03490 328 Pfam Ubiquitin family 102 173 IPR000626 GO:0005515
Trre7g03490 328 Pfam Ubiquitin family 178 249 IPR000626 GO:0005515
Trre7g03490 328 PANTHER UBIQUITIN 24 103 - -
Trre7g03490 328 ProSitePatterns Ubiquitin domain signature. 202 227 IPR019954 -
Trre7g03490 328 SUPERFAMILY Ubiquitin-like 250 327 IPR029071 -
Trre7g03490 328 CDD Ubl_ubiquitin 100 175 - -
Trre7g03490 328 PRINTS Ubiquitin signature 76 97 IPR019956 -
Trre7g03490 328 PRINTS Ubiquitin signature 55 75 IPR019956 -
Trre7g03490 328 PRINTS Ubiquitin signature 34 54 IPR019956 -
Trre7g03490 328 FunFam Polyubiquitin 3 100 175 - -
Trre7g03490 328 Gene3D - 176 252 - -
Trre7g03490 328 Gene3D - 16 99 - -
Trre7g03490 328 Gene3D - 253 328 - -
Trre7g03490 328 Gene3D - 100 175 - -
Trre7g03490 328 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Trre7g03490 328 CDD Ubl_ubiquitin 176 251 - -
Trre7g03490 328 ProSitePatterns Ubiquitin domain signature. 126 151 IPR019954 -
Trre7g03490 328 SUPERFAMILY Ubiquitin-like 175 251 IPR029071 -
Trre7g03490 328 ProSiteProfiles Ubiquitin domain profile. 176 251 IPR000626 GO:0005515
Trre7g03490 328 FunFam Polyubiquitin 3 252 327 - -
Trre7g03490 328 SUPERFAMILY Ubiquitin-like 98 175 IPR029071 -
Trre7g03490 328 CDD Ubl_ubiquitin 24 99 - -
Trre7g03490 328 ProSiteProfiles Ubiquitin domain profile. 252 327 IPR000626 GO:0005515
Trre7g03490 328 FunFam Polyubiquitin 3 24 99 - -
Trre7g03490 328 ProSitePatterns Ubiquitin domain signature. 278 303 IPR019954 -
Trre7g03490 328 SMART ubq_7 252 323 IPR000626 GO:0005515
Trre7g03490 328 SMART ubq_7 100 171 IPR000626 GO:0005515
Trre7g03490 328 SMART ubq_7 24 95 IPR000626 GO:0005515
Trre7g03490 328 SMART ubq_7 176 247 IPR000626 GO:0005515
Trre7g03490 328 ProSiteProfiles Ubiquitin domain profile. 100 175 IPR000626 GO:0005515
Trre7g03490 328 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Trre7g03490 328 SUPERFAMILY Ubiquitin-like 23 99 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03490 Trre-Chr7 41234559 41236430 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03490 252 328 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.36e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03490 K08770 - han:110936586 593.193