Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03486 ATGTGTGTTAACAAAGAAGATGGGATGATTAATGAGAAAAGAGATTCATTTGTACCTAGCACACAACACCGTTTCAAGATGCAAATCTTTGTAAAGACACTCACTGGAAAGACCATTACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTGATTTTTGCCGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTCCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTGAAGACTCTCACTGGTAAGACGATCACTCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTCAAGGCCAAGATACAAGACAAAGAGGGAATCCCACCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACATTAGCTGATTACAACATCCAGAAGGAATCCACTCTTCATCTTGTTTTGCGGCTTCGTGGTGGTATGCAGATTTTTGTGAAGACTCTTACCGGCAAGACAATAACTTTGGAGGTTGAGAGCTCAGACACTATTGACAATGTGAAAGCTAAGATACAGGACAAGGAGGGTATCCCACCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAACTCGAAGATGGGCGAACTTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGTATGCAGATATTTGTGAAAACTTTGACAGGGAAGACCATTACTTTGGAGGTAGAAAGTTCTGATACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAATATTCAGAAGGAATCTACTCTTCACCTTGTGTTGCGCCTTCGTGGTGGATTTTAA 996 0.4458 MCVNKEDGMINEKRDSFVPSTQHRFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03486 331 ProSitePatterns Ubiquitin domain signature. 53 78 IPR019954 -
Trre7g03486 331 ProSiteProfiles Ubiquitin domain profile. 103 178 IPR000626 GO:0005515
Trre7g03486 331 PANTHER UBIQUITIN 27 106 - -
Trre7g03486 331 CDD Ubl_ubiquitin 103 178 - -
Trre7g03486 331 ProSiteProfiles Ubiquitin domain profile. 27 102 IPR000626 GO:0005515
Trre7g03486 331 Gene3D - 103 178 - -
Trre7g03486 331 Gene3D - 20 102 - -
Trre7g03486 331 Gene3D - 256 331 - -
Trre7g03486 331 Gene3D - 179 255 - -
Trre7g03486 331 FunFam Polyubiquitin 3 27 102 - -
Trre7g03486 331 CDD Ubl_ubiquitin 255 330 - -
Trre7g03486 331 SUPERFAMILY Ubiquitin-like 254 330 IPR029071 -
Trre7g03486 331 ProSitePatterns Ubiquitin domain signature. 205 230 IPR019954 -
Trre7g03486 331 PRINTS Ubiquitin signature 79 100 IPR019956 -
Trre7g03486 331 PRINTS Ubiquitin signature 37 57 IPR019956 -
Trre7g03486 331 PRINTS Ubiquitin signature 58 78 IPR019956 -
Trre7g03486 331 SUPERFAMILY Ubiquitin-like 25 102 IPR029071 -
Trre7g03486 331 FunFam Polyubiquitin 3 103 178 - -
Trre7g03486 331 CDD Ubl_ubiquitin 27 102 - -
Trre7g03486 331 FunFam Polyubiquitin 3 179 254 - -
Trre7g03486 331 Pfam Ubiquitin family 29 100 IPR000626 GO:0005515
Trre7g03486 331 Pfam Ubiquitin family 181 252 IPR000626 GO:0005515
Trre7g03486 331 Pfam Ubiquitin family 257 328 IPR000626 GO:0005515
Trre7g03486 331 Pfam Ubiquitin family 105 176 IPR000626 GO:0005515
Trre7g03486 331 SUPERFAMILY Ubiquitin-like 102 178 IPR029071 -
Trre7g03486 331 CDD Ubl_ubiquitin 179 254 - -
Trre7g03486 331 SMART ubq_7 27 98 IPR000626 GO:0005515
Trre7g03486 331 SMART ubq_7 103 174 IPR000626 GO:0005515
Trre7g03486 331 SMART ubq_7 179 250 IPR000626 GO:0005515
Trre7g03486 331 SMART ubq_7 255 326 IPR000626 GO:0005515
Trre7g03486 331 ProSitePatterns Ubiquitin domain signature. 281 306 IPR019954 -
Trre7g03486 331 FunFam Polyubiquitin 3 255 330 - -
Trre7g03486 331 ProSitePatterns Ubiquitin domain signature. 129 154 IPR019954 -
Trre7g03486 331 ProSiteProfiles Ubiquitin domain profile. 255 330 IPR000626 GO:0005515
Trre7g03486 331 SUPERFAMILY Ubiquitin-like 178 254 IPR029071 -
Trre7g03486 331 ProSiteProfiles Ubiquitin domain profile. 179 254 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03486 Trre-Chr7 41142919 41146466 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03486 255 331 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 5.19e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03486 K08770 - han:110936586 592.808