Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre7g03469 | ATGGAAGGTGAGGCTAGTTCGGAGGGGGATAGTGATCGGAAAAGGGGTGGTGGTGGAGATGATAACAGCGATGAAAATAACAACAATAAGAACAACAATAATGGAAGCAATAGCAAAATTGCGGTTTCTAATGAGGGGCAAAGCAAGCCTAAGAGACAGATGAAGACACCGTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCTTTGGATAATTACCCTTCGGAGCCGGTGAGGATCGAGTTGTCTGAGAAATTGGGGTTGACGGATCGGCAATTGCAGATGTGGTTTTGCCATAGGAGGTTGAAGGATAAGAAGGAATCGGCTCCCAAGAAGGGGCCGCCACCACGGAAGCCAGTGGTGGAGCCTTTGCCGGATTCTCCGGTGGATGACCTCAGAATGGTCTCTGAGCATGGTAATGGGTATGGATCAGGGTCGGGTTCAGGTTCCAGTCTGTCTACCCGGTTGGAGGGCCGGAATGCAATCCCCCTGAGTGTTGGTTATTATGAGTCTCCGCAGGTTGAAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCTCAGTTAGGTGAACCCTTGAGGGAACATGGACCCATTCTAGGAGTGGAGTTTGATACATTGCCACCAGATGCTTTTGGAGCACCTATAGCAGTTACAGAACACCAGAAGCGACCTCGTCTTACCTATGACAGTAAAATGTATGGAAGACATGATGGTAGAACAAACAAGGCTATGGCAAGGACATCCCTTGAATATCAACATCAACCAAACCAGTCTGGCATTAAACCTGATGCTTTTGGACAGTTCGGCCAATCTCATTTACATACTCCGAAGGAGGGTCCTTCGAGAAACTCTCCACTACCTAGAATTCATGCCACCAAGGGTCATTCTTCTCGTGTTTCTCTTTTGTCTCAAAAAGACAAGAAAGTGAGTCCCTACCAATCTCCTCCTCGGGATGATGTTGTCCCTACACAGGAGTTGTACACAAACACTGCGAATGTTGGAATGAACTCCCACCAAACTGATTGCCTAACTGGTGGGTCTGAAAATCCCTATGCTTCACCCAGTGGACAAATTTTTCAAAACAATGCAACACATAACGATAGGAAACGGAAGGGTGATGATGCCAAAATTACAAGGGATGTTGAAGGCAATGAGATGAGAATCCAGAGAGAGCTCGAAAAACAAGATAACCTTAGAAGAAAGAATGAGGAGCGGATAAGGAAAGAAATGGAGAGACAAGATCGTGAAAGGAGAAAGGAAGAAGAGAGATTGATGCGTGAGAGACAACGTGAAGAGGAAAGAACAAAACGAGAGGAAAAACGTGAAATTGAACGAAGGGAAAAGTATTTGTTGAAAGAAAATTTAAAAGCCGAGAGAATGAGGCAAAAAGAAGAGCTTCGGAAAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCACATGCCCGTAAAATTGCTAAGGAATCCATGGAACTTATTGAGGATGAACAACTGGAAATGATGGAGTTAGCTGCTTCAAGCAAGGGGCTTTCCTCTATTATCCGTCTTGATTTTGATACTTTGCAAAACATTGACTCATTTAGGGGTTCACTGTGTGTTTTCCCACCCGAGAATGTAAAGCTAAGAAAACCATTTGCCATCCAACCGTGGATCAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAGGTTTTTGATTACCTTTGCTGATGTTCTGGAATTATGGCCTTTTACTCTTGATGAGTTCGTGCAAGCATTTCACGATTATGATTCAAGATTGTTAGGTGAGATACATGTTGCCATCCTTAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTGTTACAGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGCTAGCATTGTCTGCAGGATATGGACCACAGTTTAAGAAAAGAAGTATTACAAGTTCACGTGCAAATAGTAAAGATGAGGGAAGAAGCTGCGAAGATGTCATTTCTGCACTTCGTAATGGTTCAGCAGCTGGAAATGCGGTGGCAAAAATGCAGGAGAGAGGTCTATTAGGACCTCGAAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCATGTTCTCTCGCTAGAGAGTGGTGAGGGATTGAATGTGATAGAGCTTGCCGAGAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAGTAGCCCCATCAACTTATTGTGTACGTGCTGCATTTAGAAAGGATCCTGCTGATGCCGAGTCCATTCTTTCCGAAGCAAGAAAGAAAATTCAGATATTTGAAAACGGGTTTCTAGCTGAGGAAGATGCTGATGATGGTGAAAGAGAAGAGTCGGAAAGTGAAGTCGATGAGGATCCTGAAGTTGATGATTTGGTTAATCCTTCAAGTGTTAACAAAACATCTGAACATTGTAATGTTTTTTCATCAAGTGGAAAAGAAAATCTTGGTCATGATGCAGAACTTAAAGATGAGTTCGATAAGGATCTGCCTTGTTATCCTGACAATGGTTCTAAGAATGCTGATCGTCCGCGTGCTGTTTCTGGACAACCTGTTGCTTGTGAAAATCTAAATGCCAGAAATCTAGGTGAAGATAACATGGAAATTGATGAAAGTAAGTCTGGAGAGTCATGGATTCAAGGGCTTACTGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGGTTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCCCTGAAGAAGCAAATGTTGGCAGAAGCAGCAATTGATAAAATTCGCATGAAAGATGATAATGTCATTAAATCAGATTTTCCTTCTATCAAGGCTGAAACACAGCTTACATGTGCTGCTGTGGAGGGCAACCAAAGCCCCTTGCTTGATACTAATAGTTGCAATAATAATAACGAGGAATCTCCCAGCAAAACAGAAAATAAGAGACTATCTCTTGTTGGACAAAACCTTTCTGAAAAGCTCTCATCAGGTCAAGATCTCTGCATAGGTCCTGATAATCCTCAGACCCTGTTATCTGCGCAATATTCAAAACGGTCACGATCTCAATTGAAATCTTATATTTCCCACCTAGCAGAGGAGATGTACATCTATAGATCCTTACCCCTTGGGCAAGACCGCAGACATAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCGGGAAGGATCTTTGTTGAATATCATGATGGCAAATGGAGGCTTATTGATTCTGAAGAGGCCTTTGACGCCCTTCTGAACTCACTGGATTCACGTGGCATCCGGGAATCACATTTGCGTCTAATGTTGCTAAAGATTGAGAATATATTTAAGGAAAATGTTCAAAAGAAAGCAAAATGTGCCAAAGTCGATAACACAGATGAAATCCGTGTTAAAAATGAAGCTGATGAAACAGATTCCAGCCCTGATAACCACACTAGATCTGACAGTCCTAGTAGTACTCTTTGTGGCTTGAGCTCTGATACTTCAGAAACTTCGTCATCCTTCAGAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAAGCTGCCTTGGGAAGGTATCAAGATTTTCAAAAATGGATATGGAAAGAATGTTATAACCCATCAATATTATGTGCAATGAAATATGGGGAAAAGAGATGCAAACCTCAGGTTGACATATGTGATACCTGTCTCGACCTTTATTGCTTGGAAGATTCCCATTGCAGTTATTGCCACCGCACTTTTCCATCAAGTGATGGATTTAATTTTTCTGAACATGCTTTTGAATGTGGGAACAAGTTACCCAAAGATATTTGTATTCTGGATTCTTCTCTTCCTCTGAGGACAAGACTGCTCAAGGCCATACTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTGCAATCAATTTGGACAGAAGATATTAGGAGGCTCTGGGGTGTGAAGTTGAACAGATCTTCTTCTGTAGAGGAACTTCTACAGATATTGACTCTATTTGAGAGAGCACTAAAGCGAGATTTTTTATCATCATCCTTCTCTACAACTGGGGACTTGTTGGGGACGAGCACTATGTCGGAGAGTGCTGCACATAATTCCATGGATCTTGAATCAGTTCCTGTTCTTCCATGGGTTCCGCGGACCACTTCAGCTGTGTCTCTCAGACTTTTTGAGTTTGACACCTCCATCGCTTACGTTAAGCTAGAGAAACCTGAGCTGTGTGAGGAGAAAGAAGCTAGATACATAAAGCTTCCTTCAAGATATGCTTCTGTCAAATCTACTAAAGTGGTTGAGCCGGCAGACTTGGATCATGATGAACTAATGAAAGTGAAATCTGCTCCTATTCTGCACAGCAGCAAAAAACGGGGACGAGTGAATCATGATAAAGGAAGGTCTAAAAAACAGTTTAAAAGAACGGATGATTCCAAACGAGATAATGTCCACCAAAATTTTATGGTCACTGATAATCTAAGTCAAAGAATAAAACAGCAGGGACAAGGATCACAAGGACAAGCAGGTGGACGTGGCCGTCGGACAGTCAGGAAAAGGAGAGCGGAGAAGAGGGTTGTTGAAGATTTTTTACTGGATGATAGGGCTGCCAATCATAGCTTCACTTTTGGTAGAGAACCATCAAGAATCTTGGATGAGGACTGGAATGTTGAGAAGACTGGACCCATCCATATGGAAGTTGCTGACATGAGTAGCAGCAGTGAAGAGGTTGAATATGATGACAACGTCCAGGCAGTTGAATCTGATGACAATGTCGAAGCAGTAGAGTACGGTCAAGGAAACTGGGAGATAGGTTTTAATGGTACTCCCAACAGATGGAATAGGGATTTGGTTGGAATGAGTGATGAAGAAGATGCGGAAGTTTTTGAAGATGACAATAACAATGGCATTGAAGAGAATGAAGAGGAAGAGGAAGAGGAGGAGGACGAGGAGGAGGGTTTTGAGGCAGATGTTATGAGCGAGGGTTCAGATGGTATGGCCAATAATAGAGTTGTAAATGAAGAAAGCTCAGACTCGAGTGACTCCGAAGATTCTTCTGATTAG | 5280 | 0.4278 | MEGEASSEGDSDRKRGGGGDDNSDENNNNKNNNNGSNSKIAVSNEGQSKPKRQMKTPFQLETLEKAYALDNYPSEPVRIELSEKLGLTDRQLQMWFCHRRLKDKKESAPKKGPPPRKPVVEPLPDSPVDDLRMVSEHGNGYGSGSGSGSSLSTRLEGRNAIPLSVGYYESPQVEMELRAIACVEAQLGEPLREHGPILGVEFDTLPPDAFGAPIAVTEHQKRPRLTYDSKMYGRHDGRTNKAMARTSLEYQHQPNQSGIKPDAFGQFGQSHLHTPKEGPSRNSPLPRIHATKGHSSRVSLLSQKDKKVSPYQSPPRDDVVPTQELYTNTANVGMNSHQTDCLTGGSENPYASPSGQIFQNNATHNDRKRKGDDAKITRDVEGNEMRIQRELEKQDNLRRKNEERIRKEMERQDRERRKEEERLMRERQREEERTKREEKREIERREKYLLKENLKAERMRQKEELRKEKEAERRKAALEKAHARKIAKESMELIEDEQLEMMELAASSKGLSSIIRLDFDTLQNIDSFRGSLCVFPPENVKLRKPFAIQPWINSEENVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAILKVIIKDIEDVARTPVTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQFKKRSITSSRANSKDEGRSCEDVISALRNGSAAGNAVAKMQERGLLGPRRSRHRLTPGTVKFAAFHVLSLESGEGLNVIELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERVAPSTYCVRAAFRKDPADAESILSEARKKIQIFENGFLAEEDADDGEREESESEVDEDPEVDDLVNPSSVNKTSEHCNVFSSSGKENLGHDAELKDEFDKDLPCYPDNGSKNADRPRAVSGQPVACENLNARNLGEDNMEIDESKSGESWIQGLTEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMLAEAAIDKIRMKDDNVIKSDFPSIKAETQLTCAAVEGNQSPLLDTNSCNNNNEESPSKTENKRLSLVGQNLSEKLSSGQDLCIGPDNPQTLLSAQYSKRSRSQLKSYISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGKWRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKKAKCAKVDNTDEIRVKNEADETDSSPDNHTRSDSPSSTLCGLSSDTSETSSSFRIELGKSESDKKAALGRYQDFQKWIWKECYNPSILCAMKYGEKRCKPQVDICDTCLDLYCLEDSHCSYCHRTFPSSDGFNFSEHAFECGNKLPKDICILDSSLPLRTRLLKAILAFIEVSVPPEALQSIWTEDIRRLWGVKLNRSSSVEELLQILTLFERALKRDFLSSSFSTTGDLLGTSTMSESAAHNSMDLESVPVLPWVPRTTSAVSLRLFEFDTSIAYVKLEKPELCEEKEARYIKLPSRYASVKSTKVVEPADLDHDELMKVKSAPILHSSKKRGRVNHDKGRSKKQFKRTDDSKRDNVHQNFMVTDNLSQRIKQQGQGSQGQAGGRGRRTVRKRRAEKRVVEDFLLDDRAANHSFTFGREPSRILDEDWNVEKTGPIHMEVADMSSSSEEVEYDDNVQAVESDDNVEAVEYGQGNWEIGFNGTPNRWNRDLVGMSDEEDAEVFEDDNNNGIEENEEEEEEEEDEEEGFEADVMSEGSDGMANNRVVNEESSDSSDSEDSSD | 1759 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1558 | 1582 | - | - | |
Trre7g03469 | 1759 | Coils | Coil | 451 | 488 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 861 | 880 | - | - | |
Trre7g03469 | 1759 | CDD | homeodomain | 51 | 107 | IPR001356 | GO:0003677 | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1038 | 1058 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1696 | 1759 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 833 | 858 | - | - | |
Trre7g03469 | 1759 | Coils | Coil | 1698 | 1729 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 22 | 55 | - | - | |
Trre7g03469 | 1759 | Coils | Coil | 980 | 1000 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1524 | 1541 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1696 | 1730 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 103 | 153 | - | - | |
Trre7g03469 | 1759 | Pfam | DDT domain | 556 | 611 | IPR018501 | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1213 | 1246 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 883 | 899 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 250 | 320 | - | - | |
Trre7g03469 | 1759 | Pfam | HB1, ASXL, restriction endonuclease HTH domain | 737 | 805 | IPR007759 | GO:0006355 | |
Trre7g03469 | 1759 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 29 | 1759 | IPR044977 | GO:0006357 | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1520 | 1592 | - | - | |
Trre7g03469 | 1759 | ProSiteProfiles | 'Homeobox' domain profile. | 46 | 106 | IPR001356 | GO:0003677 | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1227 | 1246 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 833 | 915 | - | - | |
Trre7g03469 | 1759 | Gene3D | - | 20 | 107 | - | - | |
Trre7g03469 | 1759 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 1116 | 1188 | IPR028941 | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Trre7g03469 | 1759 | ProSiteProfiles | DDT domain profile. | 555 | 614 | IPR018501 | - | |
Trre7g03469 | 1759 | Coils | Coil | 402 | 445 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 363 | 395 | - | - | |
Trre7g03469 | 1759 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 941 | 984 | IPR028942 | - | |
Trre7g03469 | 1759 | SUPERFAMILY | Homeodomain-like | 38 | 106 | IPR009057 | - | |
Trre7g03469 | 1759 | SMART | HOX_1 | 48 | 110 | IPR001356 | GO:0003677 | |
Trre7g03469 | 1759 | ProSiteProfiles | HARE-type HTH domain profile. | 737 | 806 | IPR007759 | GO:0006355 | |
Trre7g03469 | 1759 | Pfam | Homeodomain | 49 | 105 | IPR001356 | GO:0003677 | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 1542 | 1557 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 357 | 395 | - | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 408 | 440 | - | - | |
Trre7g03469 | 1759 | SMART | testlast3 | 555 | 614 | IPR018501 | - | |
Trre7g03469 | 1759 | MobiDBLite | consensus disorder prediction | 295 | 309 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre7g03469 | Trre-Chr7 | 40723391 | 40732411 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre7g03469 | 43 | 1683 | Homeobox Transcription Factor Family | AT1G28420 | 48.483 | 0.0 | 1310 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-other | Trre7g03469 | WSD | 8.6e-16 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre7g03469 | - | - | gmx:100818817 | 2230.68 |