Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03469 ATGGAAGGTGAGGCTAGTTCGGAGGGGGATAGTGATCGGAAAAGGGGTGGTGGTGGAGATGATAACAGCGATGAAAATAACAACAATAAGAACAACAATAATGGAAGCAATAGCAAAATTGCGGTTTCTAATGAGGGGCAAAGCAAGCCTAAGAGACAGATGAAGACACCGTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCTTTGGATAATTACCCTTCGGAGCCGGTGAGGATCGAGTTGTCTGAGAAATTGGGGTTGACGGATCGGCAATTGCAGATGTGGTTTTGCCATAGGAGGTTGAAGGATAAGAAGGAATCGGCTCCCAAGAAGGGGCCGCCACCACGGAAGCCAGTGGTGGAGCCTTTGCCGGATTCTCCGGTGGATGACCTCAGAATGGTCTCTGAGCATGGTAATGGGTATGGATCAGGGTCGGGTTCAGGTTCCAGTCTGTCTACCCGGTTGGAGGGCCGGAATGCAATCCCCCTGAGTGTTGGTTATTATGAGTCTCCGCAGGTTGAAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCTCAGTTAGGTGAACCCTTGAGGGAACATGGACCCATTCTAGGAGTGGAGTTTGATACATTGCCACCAGATGCTTTTGGAGCACCTATAGCAGTTACAGAACACCAGAAGCGACCTCGTCTTACCTATGACAGTAAAATGTATGGAAGACATGATGGTAGAACAAACAAGGCTATGGCAAGGACATCCCTTGAATATCAACATCAACCAAACCAGTCTGGCATTAAACCTGATGCTTTTGGACAGTTCGGCCAATCTCATTTACATACTCCGAAGGAGGGTCCTTCGAGAAACTCTCCACTACCTAGAATTCATGCCACCAAGGGTCATTCTTCTCGTGTTTCTCTTTTGTCTCAAAAAGACAAGAAAGTGAGTCCCTACCAATCTCCTCCTCGGGATGATGTTGTCCCTACACAGGAGTTGTACACAAACACTGCGAATGTTGGAATGAACTCCCACCAAACTGATTGCCTAACTGGTGGGTCTGAAAATCCCTATGCTTCACCCAGTGGACAAATTTTTCAAAACAATGCAACACATAACGATAGGAAACGGAAGGGTGATGATGCCAAAATTACAAGGGATGTTGAAGGCAATGAGATGAGAATCCAGAGAGAGCTCGAAAAACAAGATAACCTTAGAAGAAAGAATGAGGAGCGGATAAGGAAAGAAATGGAGAGACAAGATCGTGAAAGGAGAAAGGAAGAAGAGAGATTGATGCGTGAGAGACAACGTGAAGAGGAAAGAACAAAACGAGAGGAAAAACGTGAAATTGAACGAAGGGAAAAGTATTTGTTGAAAGAAAATTTAAAAGCCGAGAGAATGAGGCAAAAAGAAGAGCTTCGGAAAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCACATGCCCGTAAAATTGCTAAGGAATCCATGGAACTTATTGAGGATGAACAACTGGAAATGATGGAGTTAGCTGCTTCAAGCAAGGGGCTTTCCTCTATTATCCGTCTTGATTTTGATACTTTGCAAAACATTGACTCATTTAGGGGTTCACTGTGTGTTTTCCCACCCGAGAATGTAAAGCTAAGAAAACCATTTGCCATCCAACCGTGGATCAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAGGTTTTTGATTACCTTTGCTGATGTTCTGGAATTATGGCCTTTTACTCTTGATGAGTTCGTGCAAGCATTTCACGATTATGATTCAAGATTGTTAGGTGAGATACATGTTGCCATCCTTAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTGTTACAGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGCTAGCATTGTCTGCAGGATATGGACCACAGTTTAAGAAAAGAAGTATTACAAGTTCACGTGCAAATAGTAAAGATGAGGGAAGAAGCTGCGAAGATGTCATTTCTGCACTTCGTAATGGTTCAGCAGCTGGAAATGCGGTGGCAAAAATGCAGGAGAGAGGTCTATTAGGACCTCGAAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCATGTTCTCTCGCTAGAGAGTGGTGAGGGATTGAATGTGATAGAGCTTGCCGAGAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAGTAGCCCCATCAACTTATTGTGTACGTGCTGCATTTAGAAAGGATCCTGCTGATGCCGAGTCCATTCTTTCCGAAGCAAGAAAGAAAATTCAGATATTTGAAAACGGGTTTCTAGCTGAGGAAGATGCTGATGATGGTGAAAGAGAAGAGTCGGAAAGTGAAGTCGATGAGGATCCTGAAGTTGATGATTTGGTTAATCCTTCAAGTGTTAACAAAACATCTGAACATTGTAATGTTTTTTCATCAAGTGGAAAAGAAAATCTTGGTCATGATGCAGAACTTAAAGATGAGTTCGATAAGGATCTGCCTTGTTATCCTGACAATGGTTCTAAGAATGCTGATCGTCCGCGTGCTGTTTCTGGACAACCTGTTGCTTGTGAAAATCTAAATGCCAGAAATCTAGGTGAAGATAACATGGAAATTGATGAAAGTAAGTCTGGAGAGTCATGGATTCAAGGGCTTACTGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGGTTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCCCTGAAGAAGCAAATGTTGGCAGAAGCAGCAATTGATAAAATTCGCATGAAAGATGATAATGTCATTAAATCAGATTTTCCTTCTATCAAGGCTGAAACACAGCTTACATGTGCTGCTGTGGAGGGCAACCAAAGCCCCTTGCTTGATACTAATAGTTGCAATAATAATAACGAGGAATCTCCCAGCAAAACAGAAAATAAGAGACTATCTCTTGTTGGACAAAACCTTTCTGAAAAGCTCTCATCAGGTCAAGATCTCTGCATAGGTCCTGATAATCCTCAGACCCTGTTATCTGCGCAATATTCAAAACGGTCACGATCTCAATTGAAATCTTATATTTCCCACCTAGCAGAGGAGATGTACATCTATAGATCCTTACCCCTTGGGCAAGACCGCAGACATAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCGGGAAGGATCTTTGTTGAATATCATGATGGCAAATGGAGGCTTATTGATTCTGAAGAGGCCTTTGACGCCCTTCTGAACTCACTGGATTCACGTGGCATCCGGGAATCACATTTGCGTCTAATGTTGCTAAAGATTGAGAATATATTTAAGGAAAATGTTCAAAAGAAAGCAAAATGTGCCAAAGTCGATAACACAGATGAAATCCGTGTTAAAAATGAAGCTGATGAAACAGATTCCAGCCCTGATAACCACACTAGATCTGACAGTCCTAGTAGTACTCTTTGTGGCTTGAGCTCTGATACTTCAGAAACTTCGTCATCCTTCAGAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAAGCTGCCTTGGGAAGGTATCAAGATTTTCAAAAATGGATATGGAAAGAATGTTATAACCCATCAATATTATGTGCAATGAAATATGGGGAAAAGAGATGCAAACCTCAGGTTGACATATGTGATACCTGTCTCGACCTTTATTGCTTGGAAGATTCCCATTGCAGTTATTGCCACCGCACTTTTCCATCAAGTGATGGATTTAATTTTTCTGAACATGCTTTTGAATGTGGGAACAAGTTACCCAAAGATATTTGTATTCTGGATTCTTCTCTTCCTCTGAGGACAAGACTGCTCAAGGCCATACTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTGCAATCAATTTGGACAGAAGATATTAGGAGGCTCTGGGGTGTGAAGTTGAACAGATCTTCTTCTGTAGAGGAACTTCTACAGATATTGACTCTATTTGAGAGAGCACTAAAGCGAGATTTTTTATCATCATCCTTCTCTACAACTGGGGACTTGTTGGGGACGAGCACTATGTCGGAGAGTGCTGCACATAATTCCATGGATCTTGAATCAGTTCCTGTTCTTCCATGGGTTCCGCGGACCACTTCAGCTGTGTCTCTCAGACTTTTTGAGTTTGACACCTCCATCGCTTACGTTAAGCTAGAGAAACCTGAGCTGTGTGAGGAGAAAGAAGCTAGATACATAAAGCTTCCTTCAAGATATGCTTCTGTCAAATCTACTAAAGTGGTTGAGCCGGCAGACTTGGATCATGATGAACTAATGAAAGTGAAATCTGCTCCTATTCTGCACAGCAGCAAAAAACGGGGACGAGTGAATCATGATAAAGGAAGGTCTAAAAAACAGTTTAAAAGAACGGATGATTCCAAACGAGATAATGTCCACCAAAATTTTATGGTCACTGATAATCTAAGTCAAAGAATAAAACAGCAGGGACAAGGATCACAAGGACAAGCAGGTGGACGTGGCCGTCGGACAGTCAGGAAAAGGAGAGCGGAGAAGAGGGTTGTTGAAGATTTTTTACTGGATGATAGGGCTGCCAATCATAGCTTCACTTTTGGTAGAGAACCATCAAGAATCTTGGATGAGGACTGGAATGTTGAGAAGACTGGACCCATCCATATGGAAGTTGCTGACATGAGTAGCAGCAGTGAAGAGGTTGAATATGATGACAACGTCCAGGCAGTTGAATCTGATGACAATGTCGAAGCAGTAGAGTACGGTCAAGGAAACTGGGAGATAGGTTTTAATGGTACTCCCAACAGATGGAATAGGGATTTGGTTGGAATGAGTGATGAAGAAGATGCGGAAGTTTTTGAAGATGACAATAACAATGGCATTGAAGAGAATGAAGAGGAAGAGGAAGAGGAGGAGGACGAGGAGGAGGGTTTTGAGGCAGATGTTATGAGCGAGGGTTCAGATGGTATGGCCAATAATAGAGTTGTAAATGAAGAAAGCTCAGACTCGAGTGACTCCGAAGATTCTTCTGATTAG 5280 0.4278 MEGEASSEGDSDRKRGGGGDDNSDENNNNKNNNNGSNSKIAVSNEGQSKPKRQMKTPFQLETLEKAYALDNYPSEPVRIELSEKLGLTDRQLQMWFCHRRLKDKKESAPKKGPPPRKPVVEPLPDSPVDDLRMVSEHGNGYGSGSGSGSSLSTRLEGRNAIPLSVGYYESPQVEMELRAIACVEAQLGEPLREHGPILGVEFDTLPPDAFGAPIAVTEHQKRPRLTYDSKMYGRHDGRTNKAMARTSLEYQHQPNQSGIKPDAFGQFGQSHLHTPKEGPSRNSPLPRIHATKGHSSRVSLLSQKDKKVSPYQSPPRDDVVPTQELYTNTANVGMNSHQTDCLTGGSENPYASPSGQIFQNNATHNDRKRKGDDAKITRDVEGNEMRIQRELEKQDNLRRKNEERIRKEMERQDRERRKEEERLMRERQREEERTKREEKREIERREKYLLKENLKAERMRQKEELRKEKEAERRKAALEKAHARKIAKESMELIEDEQLEMMELAASSKGLSSIIRLDFDTLQNIDSFRGSLCVFPPENVKLRKPFAIQPWINSEENVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAILKVIIKDIEDVARTPVTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQFKKRSITSSRANSKDEGRSCEDVISALRNGSAAGNAVAKMQERGLLGPRRSRHRLTPGTVKFAAFHVLSLESGEGLNVIELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERVAPSTYCVRAAFRKDPADAESILSEARKKIQIFENGFLAEEDADDGEREESESEVDEDPEVDDLVNPSSVNKTSEHCNVFSSSGKENLGHDAELKDEFDKDLPCYPDNGSKNADRPRAVSGQPVACENLNARNLGEDNMEIDESKSGESWIQGLTEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMLAEAAIDKIRMKDDNVIKSDFPSIKAETQLTCAAVEGNQSPLLDTNSCNNNNEESPSKTENKRLSLVGQNLSEKLSSGQDLCIGPDNPQTLLSAQYSKRSRSQLKSYISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGKWRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKKAKCAKVDNTDEIRVKNEADETDSSPDNHTRSDSPSSTLCGLSSDTSETSSSFRIELGKSESDKKAALGRYQDFQKWIWKECYNPSILCAMKYGEKRCKPQVDICDTCLDLYCLEDSHCSYCHRTFPSSDGFNFSEHAFECGNKLPKDICILDSSLPLRTRLLKAILAFIEVSVPPEALQSIWTEDIRRLWGVKLNRSSSVEELLQILTLFERALKRDFLSSSFSTTGDLLGTSTMSESAAHNSMDLESVPVLPWVPRTTSAVSLRLFEFDTSIAYVKLEKPELCEEKEARYIKLPSRYASVKSTKVVEPADLDHDELMKVKSAPILHSSKKRGRVNHDKGRSKKQFKRTDDSKRDNVHQNFMVTDNLSQRIKQQGQGSQGQAGGRGRRTVRKRRAEKRVVEDFLLDDRAANHSFTFGREPSRILDEDWNVEKTGPIHMEVADMSSSSEEVEYDDNVQAVESDDNVEAVEYGQGNWEIGFNGTPNRWNRDLVGMSDEEDAEVFEDDNNNGIEENEEEEEEEEDEEEGFEADVMSEGSDGMANNRVVNEESSDSSDSEDSSD 1759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1558 1582 - -
Trre7g03469 1759 Coils Coil 451 488 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1 59 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 861 880 - -
Trre7g03469 1759 CDD homeodomain 51 107 IPR001356 GO:0003677
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1038 1058 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1696 1759 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 833 858 - -
Trre7g03469 1759 Coils Coil 1698 1729 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 22 55 - -
Trre7g03469 1759 Coils Coil 980 1000 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1524 1541 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1696 1730 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 103 153 - -
Trre7g03469 1759 Pfam DDT domain 556 611 IPR018501 -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1213 1246 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 883 899 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 250 320 - -
Trre7g03469 1759 Pfam HB1, ASXL, restriction endonuclease HTH domain 737 805 IPR007759 GO:0006355
Trre7g03469 1759 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 29 1759 IPR044977 GO:0006357
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1520 1592 - -
Trre7g03469 1759 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1227 1246 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 833 915 - -
Trre7g03469 1759 Gene3D - 20 107 - -
Trre7g03469 1759 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1116 1188 IPR028941 -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1 21 - -
Trre7g03469 1759 ProSiteProfiles DDT domain profile. 555 614 IPR018501 -
Trre7g03469 1759 Coils Coil 402 445 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 363 395 - -
Trre7g03469 1759 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 941 984 IPR028942 -
Trre7g03469 1759 SUPERFAMILY Homeodomain-like 38 106 IPR009057 -
Trre7g03469 1759 SMART HOX_1 48 110 IPR001356 GO:0003677
Trre7g03469 1759 ProSiteProfiles HARE-type HTH domain profile. 737 806 IPR007759 GO:0006355
Trre7g03469 1759 Pfam Homeodomain 49 105 IPR001356 GO:0003677
Trre7g03469 1759 MobiDBLite consensus disorder prediction 1542 1557 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 357 395 - -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 408 440 - -
Trre7g03469 1759 SMART testlast3 555 614 IPR018501 -
Trre7g03469 1759 MobiDBLite consensus disorder prediction 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03469 Trre-Chr7 40723391 40732411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03469 43 1683 Homeobox Transcription Factor Family AT1G28420 48.483 0.0 1310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre7g03469 WSD 8.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03469 - - gmx:100818817 2230.68