Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03460 ATGGAAGAACAAAAACAGAAACAAAAACAAATCCCTTTCATTTACATTTACATTGTTCTATCAACAATCTTATCTCTATCGACAACCGTAACATCATTGAACCAAGAAGGGTTGTACCTGTACCAGTTCAAGCTAACCTTAGACGATCCAGACTCATTTCTCTCATCATGGAACCCAAGAGACACAACACCATGTAACTGGTACGGTATACGCTGCGACACAACAAACACCACCGTAACAGAACTTAACCTCTCCAACACAAACATTCAAGGTCCATTCACGGCGTCAATTCTCTGCCGTCTACCTAGCCTCTCTTCCATTAACCTCTTCAACAACTCCATTAACCAAACCTTCCCTCTCCAAATCTCTCTCTGTAACAACCTGATTCATCTCGATCTCTCCCAAAATCTCCTCACTGGTTCTCTCCCTCAAACACTCTCTCTCCTTCCTAACCTCCGTTATCTCGACCTCACCGGTAACAACTTCTCCGGTTCAATCCCAATCTCTTTCGGAACATTCCAGAAACTCGAGGTTCTATCTTTAGTCTCGAATCTTCTAGAAGGTACTATTCCTCCTTCTCTTGGCAACATAACTAGTTTAAAAATGCTTAACCTCTCTTACAACCCGTTTTTCCCGGGTCGGATTCCGTTAGAGCTTGGAAATTTAACTAACCTTGAAGTTCTATGGTTAACACAATGCAATCTCGTTGGTCTTATTCCTGAAACGCTTGGGAAACTTAAGAAGCTTAAGGATTTGGACCTTGCGATGAACGATTTGTATGGTTCTATACCGAGTTCGCTCACTGAGTTAACTAGTTTGAGACAGATTGAGTTGTATAATAACTCCTTGTCTGGTGAGTTGCCTCGGGGAATGGGGAATCTTACTTCGTTGAGGCTACTTGATGCTTCGATGAATCATTTAACGGGGAAGATTCCGGTGGAGCTTTGTTCGTTGCCGTTGGAGAGTCTTAATTTGTATGAGAATCGTTTTGAGGGTGAGTTACCGGCGAGTATAGCTAACTCGCCGAATTTGTATGAGTTGAGATTGTTTGGAAACCGGCTTACCGGAAAGTTGCCGGAGAATCTTGGGAAGCGTTCTCCTTTGAAGTGGCTTGATGTTTCGAGTAATCAGTTTTGGGGGAGTATTCCGGCGAGTTTGTGTGATCTTGGTGAGTTGGAGGAGCTTCTTGTGATATATAATTTGTTTACCGGTGAGATTCCGGCTAGTTTGGGGACGTGTCAGAGTTTGACACGTGTGCGTCTCGGCTATAATAGGTTTTCCGGTGAGGTTCCGGCGGGTATCTGGGGTCTTCCTCATGTGTATCTTCTTGAGCTTGCTCATAACTCGTTCTCCGGTTCCATTTCGAAGACTATTGCCGGAGCAGGGAACCTTTCCTTGTTGATTTTGTCGAAAAACAACTTCTCGGGAACTGTTCCCGATGAAGTTGGGTGGTTGGAAAATCTTGTCGAGTTTTCTGCCGGCGACAACATGTTCAGTGGTTCACTTCCTGATAGTTTGGTGAATCTTGGTCAGCTTGGGATTCTTGATTTTCACAACAATAGGCTCTCTGGGGAGTTACCAAAGGGGATTCATTCTTGGAAAAAGCTCAATGATTTGAATTTGGCTTACAATGAGATTGGTGGGATGATTCCTGATGAAATTGGTAGCTTATCTGTGCTTAATTTTCTTGATCTTTCTCGGAATCAATTTTCTGGGAAAATCCCTCATGGATTGCAGAATCTGAAGCTTAATCAGCTGAACTTGTCGTATAATCATCTTTCGGGAGAACTTCCCCCTCAGTTGGCTAAGGAAATGTACAAGTCTAGTTTCCTTGGTAATCCTGGTTTGTGTGGAGATTTGAAAGGTTTATGTGATGGTAGAAATGAAGTAAAGAACTTGGGTTATATTTGGTTGCTTCGAGTAATTTTCCTTGTTGCCATTTTGGTGTTACTGGTTGGTGTTGTCTTGTTCTACTTTAGGTACAAAAATTTCAAGGATGCGAAAAGGGCTATTGATAAATCGAAATGGACTTTGATGTCGTTTCATAAACTGGGTTTTGGTGAAGATGAGATTTTGAATTGTCTTGATGAAGATAATGTCATTGGAAGTGGTTCATCTGGGAAGGTTTACAAGGTTGTACTTAACAGCGGAGAAGCTGTTGCTGTGAAGAAGATATGGGGAGGTGTGAGGAAGGAAGTGGAGAGTGGAGATGCTGAGAAAGGTAGGGTTCAAGACAATGCTTTTGATGCAGAGGTTGAAACTCTAGGAAAAATCAGACACAAGAACATTGTCAAGCTATGGTGTTGCTGTACCACCAGAGACTCCCAGCTTTTGGTTTATGAGTATATGCAAAATGGTAGTCTTGGTGATTTGCTTCATAGCAGTAAAGGAGGGTTGTTGGATTGGCCAACTAGATATAAGATAGCTGTGGATGCTGCAGATGGACTCTCTTATCTGCATCATGACTGTGTTCCCCCAATTGTTCATAGAGATGTTAAATCTAACAATATCTTATTGGATGGGGACTTTGGTGCAAGGGTGGCGGATTTTGGATTAGCTAAGGTTGTCGAAACCACGGGAAAAGGGATTAAATCCATGTCCATCATAGCTGGTTCTTGTGGCTATATTGCACCAGAATATGCATACACACTCAGAGTGAATGAGAAGAGCGACATTTATAGTTTTGGCGTTGTTTTACTCGAGTTGGTTACCGGAAGACGCCCTGTGGATCCTGAATTTGGAGAGAAAGATTTAGTCAAGTGGGTTTGCACTACATTGGATCAAAAAGGTGTGGATCATGTACTTGACTCAAGGCTTGATTCATGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGTCTCATGTGTACTAGTCCTCTTCCAATCAACAGACCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAGCTAGGAATAGAGAACCAAATGAAACCAACCAAGAAAGATGGAAAATTAACACCTTATTACTATGATGATGCCTCAGATCATGGAAGTATTGTTTGA 3027 0.4209 MEEQKQKQKQIPFIYIYIVLSTILSLSTTVTSLNQEGLYLYQFKLTLDDPDSFLSSWNPRDTTPCNWYGIRCDTTNTTVTELNLSNTNIQGPFTASILCRLPSLSSINLFNNSINQTFPLQISLCNNLIHLDLSQNLLTGSLPQTLSLLPNLRYLDLTGNNFSGSIPISFGTFQKLEVLSLVSNLLEGTIPPSLGNITSLKMLNLSYNPFFPGRIPLELGNLTNLEVLWLTQCNLVGLIPETLGKLKKLKDLDLAMNDLYGSIPSSLTELTSLRQIELYNNSLSGELPRGMGNLTSLRLLDASMNHLTGKIPVELCSLPLESLNLYENRFEGELPASIANSPNLYELRLFGNRLTGKLPENLGKRSPLKWLDVSSNQFWGSIPASLCDLGELEELLVIYNLFTGEIPASLGTCQSLTRVRLGYNRFSGEVPAGIWGLPHVYLLELAHNSFSGSISKTIAGAGNLSLLILSKNNFSGTVPDEVGWLENLVEFSAGDNMFSGSLPDSLVNLGQLGILDFHNNRLSGELPKGIHSWKKLNDLNLAYNEIGGMIPDEIGSLSVLNFLDLSRNQFSGKIPHGLQNLKLNQLNLSYNHLSGELPPQLAKEMYKSSFLGNPGLCGDLKGLCDGRNEVKNLGYIWLLRVIFLVAILVLLVGVVLFYFRYKNFKDAKRAIDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLNSGEAVAVKKIWGGVRKEVESGDAEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDSQLLVYEYMQNGSLGDLLHSSKGGLLDWPTRYKIAVDAADGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGLAKVVETTGKGIKSMSIIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVLLELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHVLDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQELGIENQMKPTKKDGKLTPYYYDDASDHGSIV 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03460 1008 Gene3D Ribonuclease Inhibitor 35 187 IPR032675 -
Trre7g03460 1008 Gene3D Ribonuclease Inhibitor 382 483 IPR032675 -
Trre7g03460 1008 SMART LRR_typ_2 557 580 IPR003591 -
Trre7g03460 1008 SMART LRR_typ_2 222 245 IPR003591 -
Trre7g03460 1008 SMART LRR_typ_2 509 532 IPR003591 -
Trre7g03460 1008 SMART LRR_typ_2 101 125 IPR003591 -
Trre7g03460 1008 SMART LRR_typ_2 389 413 IPR003591 -
Trre7g03460 1008 SMART LRR_typ_2 270 294 IPR003591 -
Trre7g03460 1008 SMART LRR_typ_2 149 175 IPR003591 -
Trre7g03460 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Trre7g03460 1008 ProSiteProfiles Protein kinase domain profile. 695 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g03460 1008 Pfam Leucine rich repeat 102 162 IPR001611 GO:0005515
Trre7g03460 1008 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 33 197 - -
Trre7g03460 1008 Gene3D Ribonuclease Inhibitor 484 623 IPR032675 -
Trre7g03460 1008 Gene3D Ribonuclease Inhibitor 188 287 IPR032675 -
Trre7g03460 1008 Pfam Protein kinase domain 697 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g03460 1008 SMART serkin_6 695 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g03460 1008 Gene3D Phosphorylase Kinase; domain 1 679 782 - -
Trre7g03460 1008 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 396 979 - -
Trre7g03460 1008 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515
Trre7g03460 1008 FunFam Receptor-like protein kinase HSL1 679 782 - -
Trre7g03460 1008 SUPERFAMILY RNI-like 81 447 - -
Trre7g03460 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 783 992 - -
Trre7g03460 1008 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Trre7g03460 1008 SUPERFAMILY L domain-like 400 617 - -
Trre7g03460 1008 Gene3D Ribonuclease Inhibitor 288 381 IPR032675 -
Trre7g03460 1008 SUPERFAMILY Protein kinase-like (PK-like) 691 976 IPR011009 -
Trre7g03460 1008 Gene3D Transferase(Phosphotransferase) domain 1 783 1000 - -
Trre7g03460 1008 FunFam Receptor-like protein kinase HSL1 319 626 - -
Trre7g03460 1008 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Trre7g03460 1008 FunFam Leucine-rich receptor-like protein kinase family protein 215 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03460 Trre-Chr7 40468711 40472558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03460 29 1008 Receptor kinase-like Gene Family AT1G28440 71.023 0.0 1420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre7g03460 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03460 - - gmx:100819887 1672.14