Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03398 ATGGTCAAGAATGCTGAAATGAACACTCAGAGAATTGCAGTGGCTATTGCTCTGGACCCTCCTGGCAGTGACACCACTACCCTTGATATAGATCACTCACCATCCTCTTCTTCTAGAATAATGCTTGTTTTTCCTTCCTGTGATTTCCCTCTAAGCGACCCCTTGTTAAATGGTGAAATTGCTTATTTGTCTCCTTTTTTGGCCTTCAATCTTAACTTGCACATTTCATGTTTGAAATCTATTATTCACAATGGTCAAGATGCTTTGTCGTCTTATTTCAAACGTCAATGCCAAGTGGGTGATGAAGATGCAGCTAAAAGCATTGAAGATTCTGTCATTAATATAGAGTTGGAGCCTCTCGCTGAACCTCCCAGATTTGCCTCCCTTCTGAGGGTTGCTTTTGTGAAGATACCAGAATGTGGCGTCCTTGATTCCATTAAACCAACTTCAGATGTTGAATCCAAAGAACGTCAAGACATGATTGACTTGGCTTTGCAGAAGTACTTCGAAGTCGATAGATATTTGTCAAGTAAAGATATTTTCGGAATTGACATTAGTTGGAATTGTAATTCCACTATTTGCATTCCTTGTAACCACAAAACACAAAAGAAAAGTGACAACTTTATCTGTTTTAAGGTCATTGCTATGGAACCATCAGATGAACCAGTTCTTCGTGTCAATAAAACCTTAACTGCTTTGGTGTTAGTAGGGAGTTCCCCATCTGCCCTTCCTCCGGATTTGCTAATTGCTGGGCCAGAAGGGACTGTGCCTTTGCAAAGGGACACAGTGAAGATCTTGGCTTCAATACTAGCACCAACTTTATGTCCAACTGCACTTTCTTCCAAGTTTAGAGTTTCAGTGTTATTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGACGACTAGGTCTGCATGTGGTGGAATATAACTGTCATGATCTAATGGGCTCCGAGAGAACATCTGTTGCTCTCACTCAAGTTTTCAAGACTGCTCAAAGATACTCGCCAACAATACTTCTTCTTCGTCATTTTGAGGTTTTCCAAGATTCGCAATCACCTGAGGTTTCACAAAATGATCAAAGAAGCAATACATCCGAAGTTGCATCAGTCATTAGGAAATTCACTGAGCCAGTTGGCGAACATGGTGATAGTAACCCTTTGGTGAAATCAAACGGCGAATTTGTGGAGAAGACTTCTGAAAAGACAAGTGGGCCCCAGGTCCTGTTGATTGCGGCTTCTGACAGTTCAGAGGGTCTACCTTCATCTATCAGACGCTGCTTTAGCCATGAAATAAACATGGGGCCTTTAACAGAAGAGCAAAGGGCTGAAATGCTATTGCATTCACTTCAAAATGTTTATGGACTCCACTCTAATACTGATCTAGACGGTTTTGTAAAAGAAATAGTTGGACAGACATCTGGTTTCATGCCCAGGGATATGTGTGCTTTAATTGCGGATGCTGGTGCCAGCTTATTTCCCAGGAACAATGCCGAAGTAGACAAAGATGAACCTGAAGATGCAGATAGTTCTCTTAGTTCCAAGGTAACGGAGGACAACAACCAGTCAAAAGTTTCAGCTCTGAAACCTGGGAAAGAAGACTTGGTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCAAATGTAAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTACCTCTCTTACATAAAGATCTATTTGCATCCGGATTACGCAAGCGGTCTGGTGTTCTTTTGTATGGCCCCCCTGGAACTGGCAAAACTTTATTAGCAAAAGCTGTTGCTACAGAATGCTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATAGGAGAATCTGAAAAGAATGTTCGAGACATTTTTCAGAAGGCCAGATCAGCACGTCCATGTGTCATATTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGAGCTTCCGGAGATTCTGGAGGTGTTATGGACAGAGTTGTTTCACAGATGCTTGTAGAAATTGATGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGATCCGGCACTTCTTCGCCCTGGTCGTTTTGATAAATTGTTATATGTTGGAGTTAACTCTGATGCATCATACAGAGAGAGGGTACTGAAAGCTCTAACGAGAAAGTTCAAATTGCATGAAGATGTTTCACTTTACGCCATTGCAAAAAAGTGTCCACCAAACTTCACCGGCGCAGACATGTATGCCTTGTGCGCAGATGCTTGGTTCCTCGCGGCAAAACGCAGGGTTTTGAATGCAGATCCAGAGTCCTCCAACCCAGATAATGAAGCAGATTCTATTGTAGTTGAATACGACGATTTTGTCCAGGTCTTAGAAGAGCTTCAGCCTTCCCTCTCTACGGCTGAGCTTAAGAAGTATGAGCTTCTTAGGGATCAGTTTGAAGGCACCTCTAAATGA 2547 0.4197 MVKNAEMNTQRIAVAIALDPPGSDTTTLDIDHSPSSSSRIMLVFPSCDFPLSDPLLNGEIAYLSPFLAFNLNLHISCLKSIIHNGQDALSSYFKRQCQVGDEDAAKSIEDSVINIELEPLAEPPRFASLLRVAFVKIPECGVLDSIKPTSDVESKERQDMIDLALQKYFEVDRYLSSKDIFGIDISWNCNSTICIPCNHKTQKKSDNFICFKVIAMEPSDEPVLRVNKTLTALVLVGSSPSALPPDLLIAGPEGTVPLQRDTVKILASILAPTLCPTALSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMGSERTSVALTQVFKTAQRYSPTILLLRHFEVFQDSQSPEVSQNDQRSNTSEVASVIRKFTEPVGEHGDSNPLVKSNGEFVEKTSEKTSGPQVLLIAASDSSEGLPSSIRRCFSHEINMGPLTEEQRAEMLLHSLQNVYGLHSNTDLDGFVKEIVGQTSGFMPRDMCALIADAGASLFPRNNAEVDKDEPEDADSSLSSKVTEDNNQSKVSALKPGKEDLVNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLVEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYAIAKKCPPNFTGADMYALCADAWFLAAKRRVLNADPESSNPDNEADSIVVEYDDFVQVLEELQPSLSTAELKKYELLRDQFEGTSK 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03398 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 511 IPR027417 -
Trre7g03398 848 FunFam Peroxisome biogenesis protein 6 736 822 - -
Trre7g03398 848 Pfam ATPase family associated with various cellular activities (AAA) 287 439 IPR003959 GO:0005524|GO:0016887
Trre7g03398 848 Pfam ATPase family associated with various cellular activities (AAA) 602 734 IPR003959 GO:0005524|GO:0016887
Trre7g03398 848 Gene3D - 255 461 IPR027417 -
Trre7g03398 848 PANTHER AAA-FAMILY ATPASE 63 845 - -
Trre7g03398 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 842 IPR027417 -
Trre7g03398 848 CDD RecA-like_PEX6_r2 574 733 IPR047533 -
Trre7g03398 848 ProSitePatterns AAA-protein family signature. 705 723 IPR003960 GO:0005524|GO:0016887
Trre7g03398 848 Gene3D - 736 822 - -
Trre7g03398 848 FunFam Peroxisome biogenesis protein 6 256 440 - -
Trre7g03398 848 SMART AAA_5 283 443 IPR003593 GO:0016887
Trre7g03398 848 SMART AAA_5 598 738 IPR003593 GO:0016887
Trre7g03398 848 MobiDBLite consensus disorder prediction 502 518 - -
Trre7g03398 848 FunFam Peroxisomal biogenesis factor 6 560 749 - -
Trre7g03398 848 MobiDBLite consensus disorder prediction 501 537 - -
Trre7g03398 848 Gene3D - 560 837 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03398 Trre-Chr7 39596084 39601246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03398 568 807 Calmodulin-binding Proteins AT3G56690 39.344 1.53e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03398 K13339 - gmx:100820183 1373.22