Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03392 ATGGTGGAGCAATTAATTCCTGATAGATGTAATCAAACTAGCTTTCAACCAAACCGAATTGCCTCAGATTCGTGGGTATGGATTCCAGATAGATGTAATCAATTTAGTGTTGAAAGGGCTAATGCAGGTTTACTTGAATCTAAGTTGTCTGTGCAGGAAGAGGACAATGTCCATGTCGAAGAGGAGACAAGCAAAAAAGCCTCATCTTTGGACAAACATGTCCTGCTCCTTCCACCCACATCTGATTCAACTTATGACTTAGGGGCTCTTGAGGACTTTAATGTAGGTCGATTTTATAAAATTGACCATTCCAACCTTCCACCCGACTGTCCTGTTCAAATAAAATGTGTGAGCCTTGTAATGGTCAGTGGCAAAGGGGAGGGACAAGTACATCTGAGGTATCCAAGCCTCCACTCTCTTCGCACGCACTTCAACGACCAAAGTTACATGAAGAAAATCCCTGAACTTGATGAGAAGTACACGATGGGCGTCGAATTTGCCATCAAAATGCTTTGCAGGAGCATCACAGCTGAGGAGTTTGCACAAAAAAGAAACTCATGGAGCTTCTGGGCCTCTCCTACTGAAGAAAACTTTCAAAACCATAACAGTCCAGTTACCAATGATGCTTCTTCTAGTTTGGTTTCCAAGCAGGGTTCATGTTGGTCTCAGCTCACATTCACGGGTATGATGCAGTGGGGCCATCGCCGGCAAGTTCAGTTCTTAGGTCGATGTGAGGAGAAAAAGGTTGAATCTTTACATGAACTTCATAAGGAAAAAGGAGTCATATCTGAACATGGGACTAATAAGAAGAAAAGAAAGAATGTTGAAGAAGAATTGGAGGCTGTAAAGTTGGCTCCTTTTGGGGTACCGAGGATGACTCGCCAATGCAAGAAAAATCAACAAGGTGTGAGTCGTAGCAGTGGGGCTAAAAAGTCTATGAAAGCAGTAAATGACGCCAAGAAGCAGCAACTCATAGTTTATGGCAAAAACAAGCGAAGAATATTAATTGACAGATGGTCTGCTGAGAGGTATAAGCTGGCAGAGGAGAGTGTGTTGAAGGTTATGAAGGAAAAAGAAGCTGTGTATGGAAACTCAATAATGAGGGCAGGCTTGAGATCAGAAGCACGAAAGTATATTGGTGACACAGGTTTACTTGATCATTTGCTGAAGCACATGGCTGGAAAAGTGGCACCTGGAGGAGTTGAAAGATTTAGAAGGCGACACAATGTGGAAGGTTCAATGGAATACTGGTTAGAGAGTGCTGATCTTGTTGATATCAGACAGGAAATCGGTGTCCAAGACCCTTACTGGACTCCTCCCCCTGGATGGAAGCCTGTAGACAGCATTTTACCAGATCATGTTGCTAGAAATGAACTCAGAAAGATAAAGGAGGATATAAATCAGCTGATGCGAGATATGCAGGAGCTTGCATCAAAGAAAAGAGAGGAAGCATCGGTCATTGTGGCTACTCCTAGTTCTTGTTTGTCAAGTTTGAATTGTGAGGACTATGGTTCTCAGGTTTCTATGCAGGAGATTTATATGGAGCTGGTTCATAAAAAGGCTAAGCTTGAAGAACAACTAAAAGAAATTTCTCTGGCTTTGAATGGCATGGAGGTAACATAA 1623 0.4258 MVEQLIPDRCNQTSFQPNRIASDSWVWIPDRCNQFSVERANAGLLESKLSVQEEDNVHVEEETSKKASSLDKHVLLLPPTSDSTYDLGALEDFNVGRFYKIDHSNLPPDCPVQIKCVSLVMVSGKGEGQVHLRYPSLHSLRTHFNDQSYMKKIPELDEKYTMGVEFAIKMLCRSITAEEFAQKRNSWSFWASPTEENFQNHNSPVTNDASSSLVSKQGSCWSQLTFTGMMQWGHRRQVQFLGRCEEKKVESLHELHKEKGVISEHGTNKKKRKNVEEELEAVKLAPFGVPRMTRQCKKNQQGVSRSSGAKKSMKAVNDAKKQQLIVYGKNKRRILIDRWSAERYKLAEESVLKVMKEKEAVYGNSIMRAGLRSEARKYIGDTGLLDHLLKHMAGKVAPGGVERFRRRHNVEGSMEYWLESADLVDIRQEIGVQDPYWTPPPGWKPVDSILPDHVARNELRKIKEDINQLMRDMQELASKKREEASVIVATPSSCLSSLNCEDYGSQVSMQEIYMELVHKKAKLEEQLKEISLALNGMEVT 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03392 540 MobiDBLite consensus disorder prediction 295 311 - -
Trre7g03392 540 Coils Coil 456 483 - -
Trre7g03392 540 MobiDBLite consensus disorder prediction 295 315 - -
Trre7g03392 540 Coils Coil 513 540 - -
Trre7g03392 540 PANTHER PROTEIN DYAD 92 538 IPR044221 GO:0007131|GO:0051177|GO:0051321
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03392 Trre-Chr7 39579230 39582500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03392 338 419 PHD Transcription Factor Family AT5G22260 39.024 1.45e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03392 - - var:108339226 629.402