Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03378 ATGGCTCCTCCTAAAGGTGATAAGAAGGCTGATCCAAAGGCACAGGCCTTGAGAGCTGCCAAGGCAGTCAAGTCAGGCACTGCTATTAAGAAAAAGGCAAAGAAGATCAGAACAACGGTCACTTTCCATCGCCCAAAGACACAAACACAGAACAGGAACCCCAAGTACCCTCGCATTAGTGCTGTCCCAAGGAATAAGCTTGACCACTACCAAATTTTGAAGTTCCCACTCACCACCGAGTCGGCAATGAAGAAAATTGAGGATAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGATAAGAAAAAGATTAAGCATGCAGTGAAGAAAATGTATGACATTCAGGCAAAGAAGGTTAACACCTTAATCAGGCCTGATGGCACCAAGAAGGCCTATGTTAGGCTGACTCCTGACTACGATGCATTAGATGTAGCAAACAAGATTGGGATTATCTAA 459 0.4401 MAPPKGDKKADPKAQALRAAKAVKSGTAIKKKAKKIRTTVTFHRPKTQTQNRNPKYPRISAVPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKHAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03378 152 PANTHER 60S RIBOSOMAL PROTEIN L23A 6 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trre7g03378 152 MobiDBLite consensus disorder prediction 1 15 - -
Trre7g03378 152 Gene3D - 33 152 IPR012677 -
Trre7g03378 152 Hamap 50S ribosomal protein L23 [rplW]. 72 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trre7g03378 152 Pfam Ribosomal protein L23, N-terminal domain 13 61 IPR005633 -
Trre7g03378 152 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 69 145 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trre7g03378 152 MobiDBLite consensus disorder prediction 1 34 - -
Trre7g03378 152 Pfam Ribosomal protein L23 72 134 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trre7g03378 152 NCBIfam 50S ribosomal protein L23 76 152 IPR019985 GO:0003735|GO:0005840|GO:0006412
Trre7g03378 152 ProSitePatterns Ribosomal protein L23 signature. 130 145 IPR001014 GO:0019843
Trre7g03378 152 FunFam 60S ribosomal protein L23a 32 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03378 Trre-Chr7 39065656 39067079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03378 25 152 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 88.281 1.20e-66 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03378 K02893 - pvy:116105236 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04377 11 56262509 56264022 Trre7g03378 7 39065656 39067079 PCT