Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03360 ATGATATTGGTAAAATATGTTTTTGGGTGTGATTTGGATGCTGTAGATGAGTACATTCCTGACCCTGTTCGCCAGCTTGACAAGCCTTTCTTGATGCCCATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTTGCTACTGGTCGTGTTGAACAAGGAATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTTACAGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTAAAACGTGAGGACATTCAACGTGGTAAGGTCATTGCTAAGCCTGGTTCTGTAAAAACATCCAAGAAATTTGAGGCAGAGATATATGTACTCACAAAGGATGAGGGTGGGCGACACACTGCTTTCTTCTCCAACTATAGACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAAATGTGGTCTAACATAGGATCACCGTTTGAAGTACGACGCTCTTCTGAGTCTAGTCATAATGTTGAGGGTGATCAAGCAACTCCAGACGATTAA 603 0.4245 MILVKYVFGCDLDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGKVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMWSNIGSPFEVRRSSESSHNVEGDQATPDD 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03360 200 CDD EFTU_II 30 118 IPR033720 -
Trre7g03360 200 Gene3D Translation factors 5 117 - -
Trre7g03360 200 Pfam Elongation factor Tu C-terminal domain 119 167 IPR004160 -
Trre7g03360 200 Pfam Elongation factor Tu domain 2 44 114 IPR004161 GO:0005525
Trre7g03360 200 FunFam Elongation factor Tu 25 155 - -
Trre7g03360 200 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 120 171 IPR009001 -
Trre7g03360 200 Gene3D Translation factors 121 196 - -
Trre7g03360 200 PANTHER ELONGATION FACTOR TU-RELATED 12 171 - -
Trre7g03360 200 SUPERFAMILY Translation proteins 24 120 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03360 Trre-Chr7 38019251 38021333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03360 12 162 Eukaryotic Initiation Factors Gene Family AT5G60390 34.416 1.57e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03360 K02358 - gmx:100776891 315.464