Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03290 ATGGAGAGTGAGAATAATGAGAATGAGATGAATGAGAATGAGAATAATAATAATATATCATCAAGTTCATCATCAAGATGGAATCCAACAAAAGAACAAATAAGCATGTTGGAGAATCTGTATAAGCAAGGAATAAAGACACCAAGTGCTGAAGAAATACAACAGATAACTGCTAGGCTTAGAGTGTATGGTCACATCGAAGGAAAGAATGTCTTTTACTGGTTTCAGAATCACAAAGCTAGACAGAGACAGAAACAGAAACAAGAGAATATGGCTTATTTCAATCGACTTCTTCATAGACCTCATCCCATTTTCCCTTCACCATCAATTTATCCAAATGCTATCTGCACACAATATTGCGTACCACAACCACAAAGTCAAGAATTCAACTATTACCCTCAAAATCCAAAAGTGCTTCTACCACCATCAGTAGGTTATAGAAGGAACCAAGCTGAGAAAGTTATGTCAAATGGCATGTCAAATATTTGCAATAATCCAATGGTATATAATGAAAACAACATGCAACAGAGAAACTCTGGTCATGAAACGTTGGATCTGTTTCCTCTTCATCCAACTGGCATATTAGAAGAGAAAACAACAGATAATAAAGTGTCTTCTATTGTTTCAGTCTCTGCTGATAGTTCTACTGATACTCGTCATTCTGGTTCTCCTCATCATGTTATCAATCAACATGATGGTTGTCATGAAAATCAACCCTTCTTTGACTTTTTTAATAATTCTGCTGGATATCGTTCTTAA 759 0.3544 MESENNENEMNENENNNNISSSSSSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRVYGHIEGKNVFYWFQNHKARQRQKQKQENMAYFNRLLHRPHPIFPSPSIYPNAICTQYCVPQPQSQEFNYYPQNPKVLLPPSVGYRRNQAEKVMSNGMSNICNNPMVYNENNMQQRNSGHETLDLFPLHPTGILEEKTTDNKVSSIVSVSADSSTDTRHSGSPHHVINQHDGCHENQPFFDFFNNSAGYRS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03290 252 Pfam Homeodomain 24 84 IPR001356 GO:0003677
Trre7g03290 252 SUPERFAMILY Homeodomain-like 19 91 IPR009057 -
Trre7g03290 252 Gene3D - 24 92 - -
Trre7g03290 252 ProSiteProfiles 'Homeobox' domain profile. 20 85 IPR001356 GO:0003677
Trre7g03290 252 SMART HOX_1 22 89 IPR001356 GO:0003677
Trre7g03290 252 FunFam WUSCHEL-related homeobox 4 24 91 - -
Trre7g03290 252 MobiDBLite consensus disorder prediction 1 29 - -
Trre7g03290 252 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 5 218 IPR044555 GO:0003700|GO:0099402
Trre7g03290 252 MobiDBLite consensus disorder prediction 10 29 - -
Trre7g03290 252 CDD homeodomain 26 86 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03290 Trre-Chr7 31675490 31677002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03290 14 248 Wox Gene Family AT5G59340 40.909 2.13e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre7g03290 Homeodomain 5.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03290 - - pvu:PHAVU_011G064900g 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03290 7 31675490 31677002 Trre7g03290 7 31675490 31677002 ECH