Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03283 ATGGTTTTCTCTTCTATTCAAGGCTATGTAGATCCACCCAATTGGCACCACCAGCAACCAAATCATCATCAACAAAATGGAAATGATAACACTCAACTGCTTCCACCTTTACCACCTCAAGTGGGTGGCAATATCGGTGCTGGTGGTGGTACTATGGGCTCAATCAGACCAAACTCCATGGCTGATCAAGCTCGTAGAGCAAAAATACTACCACCAGAACCAGCACTGAAGTGTCCACGATGCGATTCAACCAACACTAAATTTTGCTACTACAACAACTATAGCCTCACTCAACCTCGTCACTACTGCAAAGCTTGTAGACGTTATTGGACTAAAGGAGGTACACTTAGAAATGTTCCTGTTGGTGGAGGGTGTCGTAGAAATAACAAGAAGAACAAAAGAAGCCGTTCAAAATCTCCTAATTCAACAAACTCTCATGAAAAACAAACTTCATCATCAAGTGCAGTCCCTTCTCATCATGAACTAATTAGTCATCAGTTACCACAAACAATTACCAACCTACCCTTCATGGGGTCGATGCAGAATCATCTGAGTCGTTATGTTGTTGGTAACGTTAACATGGGTCTCGGTTTACGCGAGATCCAAGAACAACAGCAGCAACAACAACAACAAACAGATCATATGGGGTTTCAAATTGGTGTTGGTAATGGTAACTCATCAGTTTCAGTTTCTGCTGGTGTTGCCGGAGGAGGCGTTGGAGTTGATCAGTGGCGTAATTTACAACAATTTCCTTTCATGAGTACTTTTGAATCGAATTCTGGTGGAAACAATTCCTATCCTTTTCAAGGAGAAAGCATTGAAGCAGCATCATCTGGATTTGTTGGAGATATAGCTTCAACTCCTAGGGTTGTTAATCAAGAACAACCACCACTTAAAATGGAAGAAAATAGAGGTTTAAATTTATCAAGAACTTCTCTTGGTGTCTCTGAACATAATAACCAGCAACAATTTTATTCGTGGAATGATTTATCAGGTTCTTCAACCACTCATCTCTTATAA 1020 0.4059 MVFSSIQGYVDPPNWHHQQPNHHQQNGNDNTQLLPPLPPQVGGNIGAGGGTMGSIRPNSMADQARRAKILPPEPALKCPRCDSTNTKFCYYNNYSLTQPRHYCKACRRYWTKGGTLRNVPVGGGCRRNNKKNKRSRSKSPNSTNSHEKQTSSSSAVPSHHELISHQLPQTITNLPFMGSMQNHLSRYVVGNVNMGLGLREIQEQQQQQQQQTDHMGFQIGVGNGNSSVSVSAGVAGGGVGVDQWRNLQQFPFMSTFESNSGGNNSYPFQGESIEAASSGFVGDIASTPRVVNQEQPPLKMEENRGLNLSRTSLGVSEHNNQQQFYSWNDLSGSSTTHLL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03283 339 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Trre7g03283 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 57 240 IPR045174 GO:0003700|GO:0006355
Trre7g03283 339 MobiDBLite consensus disorder prediction 45 64 - -
Trre7g03283 339 MobiDBLite consensus disorder prediction 11 32 - -
Trre7g03283 339 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Trre7g03283 339 MobiDBLite consensus disorder prediction 138 159 - -
Trre7g03283 339 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Trre7g03283 339 MobiDBLite consensus disorder prediction 117 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03283 Trre-Chr7 31427273 31428471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03283 59 338 C2C2-Dof Transcription Factor Family AT1G07640 39.726 5.01e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre7g03283 zf-Dof 5.5e-32 No_clan