Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03235 ATGATGAATTCAGAAACGCAACCTGAAACGGCGTCGTACTGGTGCTATAGCTGCACACGCTTCGTTAACATATCAGATCACACCAACATCGTCTGTCCACACTGCGATAACGGTTTCGTTGAAGAGATCCAAGCCGGCGACTCACCGCACCACCGTCTCAGTCCTTCTCCCGACGAAACCGTTTCTTCAAGGAGACAAGGCTTCCGCCGTCGTCGTCGTGAAGCTGGAAGTCGTTCACCTTTCAATCCTGTCATCGTTCTCCGTGGAAACGGTGAAGACGGTAACGATCAAGACGGTGGTAGCGCTTTTGAACTTTTCTACGATGACGGTGACGGTTCTGGTTTACGTCCGTTACCACCGACTGTTTCGGAGTTTCTACTTGGATCCGGATTTGATCGGTTGTTGGAACAGTTTTCTCAGATCGAGATGAACGGTTTTGGACGGCCGGAGAATCCGCCGGCATCAAAGGCGGCAATTGAATCTATGCCGACGGTTGAGATCTGTGAAGCGCAGGTTAGCTCCGATATGCACTGTGCTGTTTGCAAAGAAGCGTTTGAGTTAGGCGTGGAAGCGCGTGAGTTACCTTGCAAGCATATCTACCATTCCGATTGCATTCTTCCATGGTTGACTGTACGAAACTCATGCCCTGTGTGCCGCCACGAGCTTCCTTCGGATCTTAATAACCCTATGGAAACTAGGGTTTCTGGTCAAATCGATGAAGAAGCTATTGGTTTAACTATATGGAGGTTACCTGGTGGTGGATTCGCTGTTGGGAGATTCTCCGGCGGAAGAAGTGCAGGGGAAAGTCATTTCCCGGTTGTGTACACAGAGATGGATGGTGGACTGAATGCAAACGGAGCTCCGAGAAGAGTTTCTCGAACTGTTAGAAGCCATAGGGTTACTGAAAGTCGCGGAATTGGGAGAGTTTTTCGTAATTTTTTTTCATTCTTTGGGAGAAATGGTTCTTCTAGGTCAAATTCCAATTCTGAGAATGTGTCTGTGAGTAGAAGCCGTAGCTTAGTAAATTCAATTTTTAATAGAAACTGGCGAGGAAGTAGAAGAAGAACTTTGGAGTTGGAAGATTGA 1086 0.4761 MMNSETQPETASYWCYSCTRFVNISDHTNIVCPHCDNGFVEEIQAGDSPHHRLSPSPDETVSSRRQGFRRRRREAGSRSPFNPVIVLRGNGEDGNDQDGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICEAQVSSDMHCAVCKEAFELGVEARELPCKHIYHSDCILPWLTVRNSCPVCRHELPSDLNNPMETRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNANGAPRRVSRTVRSHRVTESRGIGRVFRNFFSFFGRNGSSRSNSNSENVSVSRSRSLVNSIFNRNWRGSRRRTLELED 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03235 361 SUPERFAMILY RING/U-box 158 227 - -
Trre7g03235 361 SMART ring_2 178 218 IPR001841 -
Trre7g03235 361 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Trre7g03235 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 57 223 - -
Trre7g03235 361 Pfam Protein of unknown function (DUF1117) 243 348 IPR010543 -
Trre7g03235 361 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Trre7g03235 361 Pfam Ring finger domain 177 219 IPR001841 -
Trre7g03235 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 226 IPR013083 -
Trre7g03235 361 CDD RING-H2_RNF126-like 178 219 - -
Trre7g03235 361 MobiDBLite consensus disorder prediction 47 101 - -
Trre7g03235 361 FunFam E3 ubiquitin-protein ligase RING1-like 140 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03235 Trre-Chr7 30573601 30574686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03235 117 225 C3H Transcription Factor Family AT5G01980 45.872 2.60e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03235 K11982 - gmx:100792874 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04446 11 56761096 56762181 Trre7g03235 7 30573601 30574686 PCT