Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03217 ATGGAGTCTGATCAATGTGATCAAGGTGGTGGTGGTGGTGATCAAGATGGTTTAAAACAAGTGACTAACCTTAGGTCCTATGAGTGCAATTTTTGCAAGAGAGGTTTCTCTAATGCACAAGCACTTGGAGGACACATGAATATTCATAGGAAAGACAAAGCAAAGCTCAAACAACAATCTTCTAATTTGGAGCAAGGAAATTCTAGTGAAGAGCTCAACAAATTATTACCAAACTTTTTGAATTCTAATATTGTGCTGCCTCAAAAACAAGATCAACAACATGTCCCTTCTAGAAGTGAAGAAATTCTTGTAATTGATCACACAAGACAACAACTTCCACTTTTTTCAGAATCACCAACAAAAAATGAAATGCAAAATCAACAAGGTGGTCAAATTCATCAAAGGGAAATTACTACTACTACTGCTGCTACTACTACTACCGCGACTACTACACAAGAGGCTTTGTTGTTATCTAATGATCAAGATTCTTCATTGGAGTTAGACCTTGAATTAAGACTAGGGTCTGAGCCTCATGATTCTTCAAAGCCAACGGGTACAAGAAAATTCTTTTGA 573 0.3682 MESDQCDQGGGGGDQDGLKQVTNLRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQSSNLEQGNSSEELNKLLPNFLNSNIVLPQKQDQQHVPSRSEEILVIDHTRQQLPLFSESPTKNEMQNQQGGQIHQREITTTTAATTTTATTTQEALLLSNDQDSSLELDLELRLGSEPHDSSKPTGTRKFF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03217 190 PANTHER OS07G0101800 PROTEIN 23 177 - -
Trre7g03217 190 Pfam C2H2-type zinc finger 27 51 - -
Trre7g03217 190 Gene3D Classic Zinc Finger 16 78 - -
Trre7g03217 190 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Trre7g03217 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Trre7g03217 190 SUPERFAMILY beta-beta-alpha zinc fingers 24 54 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03217 Trre-Chr7 30316193 30316765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03217 25 72 C2H2 Transcription Factor Family AT3G53820 64.583 2.91e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g03217 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03217 - - tpra:123918605 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03217 7 30316193 30316765 Trre7g03217 7 30316193 30316765 ECH