Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03161 ATGACATCGGAAGTACGAGATGATGTTTGTGATTGGCCTTTGGAGCTTCTTAAAGATTACACTTCTATATGTGAAGATAATGAATATGGAAATGCTTTTACCTTTCAAGAGCCACAACAAGAACCCTTGCCTCAAGCCAATACCATTGATGAGTGGGATCCTTTTGAAGGACAAATATTTAACAATGATGATGAGGCTTATGAATTTTACTCTGTATTTGCTCGAAAAAATGGATTTTCAATTCGACGTGATCACAGTTACAAGTCTCAAAAAAATGAGTCTGGGGATAATCCATTAGGAGTTTATAAGAGAGAATTTGTTTGTCATCGAGCTGGTATTGTTAAACAACGCAAAGTTAATGACGTGGAAAGTCAGAGGAAACGAAAATCTTCAAGATGTAATTGTAGTGCAAAGATGTTGGTTATTAATAGAACAATTGGTTTTGAAGAAAAATGGGTGGTTAACTATTTCAATAATCACCACAATCACGAGTTATTAGATGATAAGGGGGTCCAATTTCTTCCTGCTTATCGTAACATCTCAATTGTAGATCAAAATCGTATACACTTGTTATCAAAAGCTGGTTGCCCTGTGAGTCTCATAATGAGAGTGCTGGAGTTAGAGAAAGGAATAAATACAGGCAACCTACCTTTTTTGGAGAAAGATATTAGAAATTTTATTCAATCTCATAGTGGTATTGGTCAAGAAAATGATGCTTCAAATGTTCTCAAATTATGCAAAAGTTTGAAAGATATGGATGACGCCTTCAAATATGATTTCACAATAGATGAAAACAACAAATTGGAGCATATTATTTGGGTATTTGGTGATTCAATTCGAGCGTATGAAGCTTTTGGAGATGTTGTTGTTTTTGATACCACATATCGAATAAATCGTTATGATATGCCACTTGGAATATGGGTTGGAGTTGATAATCATGGAAATTCAATTTTTTTTGGATGCGTTCTATTGCGAGATGAGAAGATTCCTTCCTTCACATGGGCTTTAAAGAGTTTTCTAGCTTTTGTCAAAGGAAAGTATCCACAAACAATTCTTACGGATCAAGATCTTGCGCTTAAAGAAGCCATTGCATTGGAATTGCCAAACACAAAACATGCATTTTGCATATGGCATATTGTTGCAAAGTTGTCAAGTTGGTATTCTTTTCCATTGGGTTCGAGATATAATGACTTTAAACATGAGTTTCATAGGGTGTATCATTTAGAATGTGCAGATGCTTTTGAACAAGAATGGAAATTAATGGTTGCTCAATTTGGTCTAAGCATGGATAGACATATTGACTTACATATTGACTTGCTCTATTCCCATCGTCAATTTTGGGCCCTTGCTTATTTGAAGGACTATTTTTTTGCCGGGATGACGACAACTGGACGTTCAGAATCAATCAACGCATATATAAAAAGATTCTTAGATGTCAAAACAAGTTTGACAGATTTTGTAAATCAAGTTGGTGTTGCCGTCAAAATTAGAAATCAAGCAGGAGAAGAGGCAAGAATGCGTCAAAAGTACCATAACCCTCTATTCAGAACAAGTTTTCCCATTGAGGAACACGTGGCATCTATACTCACGCCATATGCATTTGGGTTGCTACAACATGAGATTGAGTTATCTACAAAATATGCAGCAACTGAAACAGTCCATGGCTATATTGTGCGACATCATACCAAAGTTGACGGAGGTCGTCTTGTAAGTTGGAAAGATGAAGAAAAATCAATTTCTTGTTATTGTAAAGAATTTCAGTTTTCTGGAATATTATGTAGACATGCTATTCGAGTTCTACTTGTAAAAAATTATTTTCGCCTCCCATCAAAATATCTTCTTTTTCGATGGAGGAGAGAAAGTTCATTGATCCCAAAATGTAGTCATATAGTCAACCACAATGGTAGCTCCCATGTTGAGTTTAAGTCTCTAATTCAATGTTTGGAAGTTGAATCATTAAAGACAAAAGAGCAGGAACAAGCTGCTACTAAAGAGTTAGAGAAAGTCATTCGACAGATAAAATGTATGCCTGAAAGTCAAGATAATTTGATTGATTTGGAACCCGATGTTCCAAATAATGATGGTTGTGAGGTTGAAAATCCCCCCGGTTCAAAAACGAAAGGTCGACCGAAAAGATCAAGGCCTAAAGGAGGTGTTGAAGTTGCAAAGAAGCCTCGTTACTGTCAAGTTCCAAATTGTGATAGAACTGATCATGACGCACAAAATTGTCCTAACAAAAAGAAAAGTATTGAAGTATTGCCTTCTCAATCTCCAATTAAGTAA 2283 0.357 MTSEVRDDVCDWPLELLKDYTSICEDNEYGNAFTFQEPQQEPLPQANTIDEWDPFEGQIFNNDDEAYEFYSVFARKNGFSIRRDHSYKSQKNESGDNPLGVYKREFVCHRAGIVKQRKVNDVESQRKRKSSRCNCSAKMLVINRTIGFEEKWVVNYFNNHHNHELLDDKGVQFLPAYRNISIVDQNRIHLLSKAGCPVSLIMRVLELEKGINTGNLPFLEKDIRNFIQSHSGIGQENDASNVLKLCKSLKDMDDAFKYDFTIDENNKLEHIIWVFGDSIRAYEAFGDVVVFDTTYRINRYDMPLGIWVGVDNHGNSIFFGCVLLRDEKIPSFTWALKSFLAFVKGKYPQTILTDQDLALKEAIALELPNTKHAFCIWHIVAKLSSWYSFPLGSRYNDFKHEFHRVYHLECADAFEQEWKLMVAQFGLSMDRHIDLHIDLLYSHRQFWALAYLKDYFFAGMTTTGRSESINAYIKRFLDVKTSLTDFVNQVGVAVKIRNQAGEEARMRQKYHNPLFRTSFPIEEHVASILTPYAFGLLQHEIELSTKYAATETVHGYIVRHHTKVDGGRLVSWKDEEKSISCYCKEFQFSGILCRHAIRVLLVKNYFRLPSKYLLFRWRRESSLIPKCSHIVNHNGSSHVEFKSLIQCLEVESLKTKEQEQAATKELEKVIRQIKCMPESQDNLIDLEPDVPNNDGCEVENPPGSKTKGRPKRSRPKGGVEVAKKPRYCQVPNCDRTDHDAQNCPNKKKSIEVLPSQSPIK 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03161 760 SMART 26again6 579 606 IPR006564 GO:0008270
Trre7g03161 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 672 IPR031052 GO:0006355
Trre7g03161 760 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Trre7g03161 760 MobiDBLite consensus disorder prediction 684 760 - -
Trre7g03161 760 Pfam MULE transposase domain 288 381 IPR018289 -
Trre7g03161 760 Pfam SWIM zinc finger 570 604 IPR007527 GO:0008270
Trre7g03161 760 Pfam FAR1 DNA-binding domain 68 166 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03161 Trre-Chr7 29691872 29694351 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre7g03161 FAR1 3.7e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03161 - - tpra:123922871 1118.22