Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03122 ATGAACAACAACTGGCTTTCTTTCCCTCTCTCTCCTTCTCATCCTTCTTTACCTTCTAATGATCTTCAAGCAACTCAATATCATCACTTTCCTCTTGGTTTAGTCAATGAAAACATTGAAAACCCTTTCCAAAATCATGATTGGAATCTGATGAACACACATAGTAGCAATGAAGTACCAAAGGTTGCAGATTTTCTAGGTGTGTGCAAGTCTGAAAATCACTCAGATCTTGTTGCACAAAACGAAATTCAATCAAATGATTCAGATAGTTATTTGTTTACAAATAACAACAATACTTTCATGGCAATGCAAAACCAAGTGGTAACAACATGCACCAATGAGTATCAAGAAAAGGGTAGTAATAGTAATTTGCAATCATTGACATTATCCATGGGAAGTGGTAAAGATTCAACATGTGAAACTAGTGGTGATACTAGTGCAAACACTCTTGAAGTAGCTGCTCCTAAAAGAACTTCAGAAACTTTTGGCCAAAGAACTTCAATATATCGTGGTGTAACAAAACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGACAACAGCTGTAGAAGGGAAGGACAGTCAAGAAAAGGCCGCCAAGGTGGATATGATAAAGAAGAGAAAGCTGCTAAGTCCTATGATTTAGCTGCACTTAAGTATTGGGGTACATCCACCACTACTAACTTTCCAGTTAGCAACTATGAGAAGGAAATAGATGAAATGAAGCACATGACAAGACAAGAATTTGTAGCCTCTATAAGAAGGAATAGCAGTGGTTTCTCTAGAGGTGCATCAAAGTACCGTGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGCAGGGTTGCTGGAAACAAAGATCTTTACTTGGGAACTTTCAGCACTGAAGAAGAGGCTGCAGAAGCATACGACATAGCAGCAATAAAATTCAGAGGACTCAACGCGGTCACAAACTTCGACATGACTCGTTACGATGTGAAAGCTATTCTAGAAAGCAACACACTTCCAATTGGAGGAGGAGCTGCAAAAAGACTAAAAGAAGCACAAGCACTAGAAACTTCTAGAAAACGCGAAGAAATGCTCGCACTTAACTCATCGTCTTTCCAATACGGAACAACATCAAGCTCAAGCAATCACAGGCTTCAACCTTACCCTCTCATGAATTATCATCATCATCAATTTGAACAACAACAACAATTAGTTGCTCAACCATTGTTAACCTTACAAAACAACCAAGAAAACATGTCTCAATTCTCTCAACAAGGTGGTGGTTATTTTCAAACACAGCTTGAGTTACAGCAACAACAGAATAACCAAACATCTCAGTATTACAATGGTTATTTTCAGAATCATCATGCAGCTGGTTTATTTCAGATGAATAATATAGGGTCATCTTCTTCTTCATCTTCTGTGATGGGAAATAATGTTGGTGGTGGAGGAGGATCTAGTGGGATTTATGGTAATAGTGGAGGGCTAATTGGTAATAATGGTGTTGATGAGGAATTTGTGCCGGTTAAGGTTGATTATGATATGGCAGCTGTTGATGGAGGTGGTTTTGGCGGCTGGTCGGCGGCGGGAGAGAACATGCAGACGTCAACTACAGCTGATTTGTTTACAATGTGGAATGACTATGAGCCAAGAGAAAATTAA 1665 0.3946 MNNNWLSFPLSPSHPSLPSNDLQATQYHHFPLGLVNENIENPFQNHDWNLMNTHSSNEVPKVADFLGVCKSENHSDLVAQNEIQSNDSDSYLFTNNNNTFMAMQNQVVTTCTNEYQEKGSNSNLQSLTLSMGSGKDSTCETSGDTSANTLEVAAPKRTSETFGQRTSIYRGVTKHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAAKSYDLAALKYWGTSTTTNFPVSNYEKEIDEMKHMTRQEFVASIRRNSSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPIGGGAAKRLKEAQALETSRKREEMLALNSSSFQYGTTSSSSNHRLQPYPLMNYHHHQFEQQQQLVAQPLLTLQNNQENMSQFSQQGGGYFQTQLELQQQQNNQTSQYYNGYFQNHHAAGLFQMNNIGSSSSSSSVMGNNVGGGGGSSGIYGNSGGLIGNNGVDEEFVPVKVDYDMAAVDGGGFGGWSAAGENMQTSTTADLFTMWNDYEPREN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03122 554 Gene3D AP2/ERF domain 266 327 IPR036955 GO:0003700|GO:0006355
Trre7g03122 554 Gene3D AP2/ERF domain 168 233 IPR036955 GO:0003700|GO:0006355
Trre7g03122 554 Pfam AP2 domain 266 317 IPR001471 GO:0003700|GO:0006355
Trre7g03122 554 Pfam AP2 domain 168 223 IPR001471 GO:0003700|GO:0006355
Trre7g03122 554 FunFam AP2-like ethylene-responsive transcription factor ANT 167 233 - -
Trre7g03122 554 SMART rav1_2 168 237 IPR001471 GO:0003700|GO:0006355
Trre7g03122 554 SMART rav1_2 267 331 IPR001471 GO:0003700|GO:0006355
Trre7g03122 554 SUPERFAMILY DNA-binding domain 266 326 IPR016177 GO:0003677
Trre7g03122 554 CDD AP2 266 325 IPR001471 GO:0003700|GO:0006355
Trre7g03122 554 ProSiteProfiles AP2/ERF domain profile. 168 231 IPR001471 GO:0003700|GO:0006355
Trre7g03122 554 SUPERFAMILY DNA-binding domain 167 233 IPR016177 GO:0003677
Trre7g03122 554 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Trre7g03122 554 PRINTS Ethylene responsive element binding protein signature 307 327 IPR001471 GO:0003700|GO:0006355
Trre7g03122 554 ProSiteProfiles AP2/ERF domain profile. 267 325 IPR001471 GO:0003700|GO:0006355
Trre7g03122 554 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 60 421 - -
Trre7g03122 554 CDD AP2 167 233 IPR001471 GO:0003700|GO:0006355
Trre7g03122 554 FunFam AP2-like ethylene-responsive transcription factor 266 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03122 Trre-Chr7 28995077 28998250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03122 3 548 AP2-EREBP Transcription Factor Family AT1G51190 59.359 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre7g03122 AP2 6.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03122 K09285 - gmx:100788471 697.582