Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03111 ATGGAGTCAGATCTTCAGCAGCATCCAACTATGTTTCTAGATCATCAAAATCATCATCAACAACAGATGAATTCAGGTTTAACAAGGTTTAAATCTGCACCAAGTTCTTATTTTTCGAATATTATTGATAAAGAGTTCTATGAACATCTTTTCAATAGACCTTCAAGTCCTGAAACAGAAAGAGTTTTTGCACGGTTTATGAATAGTCTTAGTGGTAGTGGAAGTGGTGGTGGTGGTGCTGGTGCTGGTGGTGATGCTGAAAGTGTTTCTGTTCCTGTTGTAGATGATTCACTGACTCAGAATCTATCAACTGTTCAACAACAACTACCTATAGTTAAGGAAGAGATTGATCAACAATCTCAAACTATGACATCAATGAATAATAATAATAATAATAATAATAATAATAATAATAATGAAACTATGGATCTTCAACAGCTTCAAAGAACACAAAGTAATATGAATAGTTATGGTTCTTCTGCTCCTCAAAATTTTTACCAAAGTTCTGGAAGACCACCTTTGCCAAATCAAATGAAAACTGGTAGAGGAAACTGTTCTAATCTTATTAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAACTGGATTTGCAGCTATGAGAGGCATAGGATCTATGGGAGCTGCTAATAGTACTAGCAAAGAAGCAAAATTTTCTTCTGCAGTAAGGTTAAAGAATGCTTCCAACTACTCCTCATTGTTAGGAGATGAAATTGGGAATAGTAGCATTCCACAAAATAATCCTGAACCTGAAGGTTTTGCTGAAACCCGGGGTAACGATTTTATCCCGGGTTTCCCTTTAGGTACTACATGGGAAGATACTGCAATCATATCTGACAATATTACCGGTCTAAAACGATACAGAGATGACGATGATGTAAAACCATTTTCTGCAGGTTTAAATCCAGCTGAAACTAAGAATGAAACTGGAGGCCAGCCTCCTACTGCGCCTTTGGCTCATCAGATGAGTTTGCCGAATACTACGGCAGAGTTAGCAGCCATTGAGAAGTTTTTGCAGTTCTCGGATTCTGTTCCGTGCAAAATTCGCGCTAAGCGTGGCTGCGCCACTCACCCAAGAAGCATTGCAGAAAGGGTAAGAAGAACTAAAATTAGTGAACGAATGAGGAAACTACAAGATCTTGTTCCAAACATGGATAAGCAAACAAACACATCAGATATGTTGGATTTGGCTGTTGAGTACATTAAAGACCTACAAAATCAAGTTGAGACTCTTTCGGACAGTCGAGCTAAGTGCACATGTTCACACAAGCAATGA 1308 0.38 MESDLQQHPTMFLDHQNHHQQQMNSGLTRFKSAPSSYFSNIIDKEFYEHLFNRPSSPETERVFARFMNSLSGSGSGGGGAGAGGDAESVSVPVVDDSLTQNLSTVQQQLPIVKEEIDQQSQTMTSMNNNNNNNNNNNNNETMDLQQLQRTQSNMNSYGSSAPQNFYQSSGRPPLPNQMKTGRGNCSNLIRHGSSPAGLFSNINIETGFAAMRGIGSMGAANSTSKEAKFSSAVRLKNASNYSSLLGDEIGNSSIPQNNPEPEGFAETRGNDFIPGFPLGTTWEDTAIISDNITGLKRYRDDDDVKPFSAGLNPAETKNETGGQPPTAPLAHQMSLPNTTAELAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQNQVETLSDSRAKCTCSHKQ 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03111 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 415 IPR011598 GO:0046983
Trre7g03111 435 SMART finulus 371 421 IPR011598 GO:0046983
Trre7g03111 435 Coils Coil 130 150 - -
Trre7g03111 435 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 429 - -
Trre7g03111 435 Gene3D - 366 435 IPR036638 GO:0046983
Trre7g03111 435 MobiDBLite consensus disorder prediction 118 173 - -
Trre7g03111 435 FunFam Transcription factor bHLH130 family 366 434 - -
Trre7g03111 435 Pfam Helix-loop-helix DNA-binding domain 370 416 IPR011598 GO:0046983
Trre7g03111 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 427 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03111 Trre-Chr7 28777970 28780447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03111 1 432 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.044 1.37e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g03111 HLH 8.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03111 - - gmx:100803833 561.222