Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03094 ATGTCAAAAACCACCGCATCCGGCGTTGACTCTCCCTTCAACGACCTCGATACACCAACACTAGACATAGAGTCTCCCACGCTACTCCACTCCATTTCAGAGCACGGAGGATACGCCTACGTCAGAATGGCATCACTGGCTGCCGCCGGCGACATTCGAGCAGCGGAAGCAGTTAGAGAGATGGCGTGGGAGCAACTTCACTCTGGACCTTGGCACTCAGTGTTGCCGGTGTGGCGTGACGCTTACTCGATGGCGTGTCTTCATGTGGCAAAGCATCACTATCGAAACGGTGAGTTTAAGGAAGCGCTTAAGGCTTTGGATATGGGAATTATTATGGGAGGGAATCTTCTTAGAAAGGATTTGGATTCTGCTATTGGTAAGGTTTCTGAAAAAGCTAGGAATATTAGGGTTTCTGATGGAAACTACCAAAATTTTGGTAACTCTGAGCATCGACTTGTTGATCATGATTTTGATGTGTCTGAGGTGCTCCAATTTTTACCTGTTAAGTCCCTTGCTTCTAAGCTTGTGGTGAAGAGGTCCGCCCTGTCGCTGGAGAAGTTCCTGAAAGATCATTACCTGTCTGGCACCCCAGTTATCATCAGTGATTGTATGGCACACTGGCCAGCCAAGAAAAACTGGAATAATATAGATTACTTGCTCAGAGTTGCTGGTGACCGCACTGTTCCGGTTGAGGTTGGGAAAAACTATTTATGTGCAGATTGGAAGCAAGAGCTAGTTACATTTTCGGAGTTTCTTGAGCGGATAAGGTCCCATAGCTGTTCTCCTGTTGGTCCGACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAGAGATATCTTTATTCCTGACTATTGTTTTGCTGGTGGAGGAGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACACCATTACACCATGATCCACATCATAACATACTAGCACAGGTTGTTGGGAAAAAATACATTAGGCTTTATCCAGCATCCGTGTGTGAGGAACTTTTCCCCTACTCGGAAACCATGCTTAGCAATTCCAGCCAGGTTGATTTAGATGATATAGACGAAAGGAAGTTTCCTAAGGTGCAAGACTTGGAATTTGTAGACTGTATTTTAGAGGAAGGTGAAATGTTATACATCCCGCCAAAATGGTGGCACTATGTGCGGTCTTTAACTACCAGTTTGTCAGTTAGCTTTTGGTGGAGTGAGGGTGAAACTTCATCTCCATCCTAA 1254 0.4522 MSKTTASGVDSPFNDLDTPTLDIESPTLLHSISEHGGYAYVRMASLAAAGDIRAAEAVREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKHHYRNGEFKEALKALDMGIIMGGNLLRKDLDSAIGKVSEKARNIRVSDGNYQNFGNSEHRLVDHDFDVSEVLQFLPVKSLASKLVVKRSALSLEKFLKDHYLSGTPVIISDCMAHWPAKKNWNNIDYLLRVAGDRTVPVEVGKNYLCADWKQELVTFSEFLERIRSHSCSPVGPTYLAQHPLFDQINELRRDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASVCEELFPYSETMLSNSSQVDLDDIDERKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGETSSPS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03094 417 Pfam Cupin-like domain 186 410 IPR041667 -
Trre7g03094 417 SUPERFAMILY Clavaminate synthase-like 180 409 - -
Trre7g03094 417 Gene3D Cupin 175 409 - -
Trre7g03094 417 SMART cupin_9 266 414 IPR003347 -
Trre7g03094 417 ProSiteProfiles JmjC domain profile. 260 417 IPR003347 -
Trre7g03094 417 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 412 - -
Trre7g03094 417 FunFam lysine-specific demethylase JMJ30 175 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03094 Trre-Chr7 28600761 28605369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03094 170 408 Acyl Lipid Metabolism Gene Families AT3G45880 25.338 3.54e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre7g03094 Cupin_8 3.1e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03094 K24444 - gmx:100813075 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03094 7 28600761 28605369 Trre7g03094 7 28600761 28605369 ECH