Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03078 ATGTCTCCTTCTCAAGCATATTGTTTTTTGAACAACCTTGCCAATGCGACAAATGAGAGTAGTATAAAAGTCCGTTTTGCTCGAATGTGGGACAATATGAATGTTCGCAAGCAAAACGAAATGATTAGCATTGACATGGTGTTGATTGATGAAGAGTCCAATTATATCCATGCATCACTTCCTAAGAAATTTGCACCCAAATTCAGGAAGAAAAACCTGCAAGAAGGAAAGATATATGTCGTCAACCAATTTGAGGTGTTAGCCAATAAAAAGAGCTATGCTGTGGTTAAAAACAATTCTTCAATGTTGCAGTTCAATGATGATACCACATACAGTGAGGTGGAAGACGATGACAGCATCCTTCTCCATGTTTTTGAGTTTGTTAAATATGCACATTTGGAATCTCGGATAGACAAACATGTGTTGATAGATATAATTGGAGTTATAATTGATGTCAATCCAATTGAGGAAAGGAAAGTTCCTGGTGGTAAAGTGGATATGCTGTCAATTCGGCTAAAAGATATAAGTGGGAACATAATCAACGTCACGTTGTGGGGTCGGCATGCTACAATTTTTGAGGACACCCTCAAGGGGAATTTGTGTGACGCTCCTGACCCAAATGTTGCAGTCATCACATCCACTACATCTAAGAGATATCAGGGTGATTTGTCTCTCAACTCATCAAGTTCAACAAAGATTTATGTCAATATAGAGATACCCGAGGCAGCTGAACTCATTCAATCATTCAAGAGTACCAATGTTCTGCATTCATCTGCAAATGCAAGTCTCACAAATTCTGCTATCTTGGACAAGACAAGGACTATCTCTGAAATTTTGAGCTCCGCAGTTTCAGGGAGTAATACGGCTGCTGTGTTTAACTGTGTTGCAACAGTGGACGAGATTTTTGATAAAAATGGATGGTATTATGTCTCATGTCCTAAGTGCAAAAAAAGTGCTTCTGCTGCAGAAACACACTTCAAGTGTGAATTCTGTCATGAAAGTGTGGATTACCCCATTACAAGGTATCGCTTGGAGCTTGGTGTCAAGGACTCTACAGGTTCGACTATATTTGTATTGTTTGATGATGTTGCTGAGCAAGTGGCACAGATGAAATTAGTTGATCTGACCGCAACTTTAGAGAATGAAACTGAGGATGGTTCATCAATACCACATCAACTGAAAAGGATTATTGGGACTATACATATATTTCAAATTAAAATGAAATCTTACTTTGAGGATCGTGGAAGACAGAGTTTCACAGTGAGTAGGATTGTGAAGCCTAAGGTGAAGGTAGAGAAAGATGACAAGCTTGACAGCGAATGTAATACCTCAAAGGAGTCTAACGATGTGGAGCAGAAAGAGGTTGCATCGGATTTGGAAGAGTGA 1386 0.3918 MSPSQAYCFLNNLANATNESSIKVRFARMWDNMNVRKQNEMISIDMVLIDEESNYIHASLPKKFAPKFRKKNLQEGKIYVVNQFEVLANKKSYAVVKNNSSMLQFNDDTTYSEVEDDDSILLHVFEFVKYAHLESRIDKHVLIDIIGVIIDVNPIEERKVPGGKVDMLSIRLKDISGNIINVTLWGRHATIFEDTLKGNLCDAPDPNVAVITSTTSKRYQGDLSLNSSSSTKIYVNIEIPEAAELIQSFKSTNVLHSSANASLTNSAILDKTRTISEILSSAVSGSNTAAVFNCVATVDEIFDKNGWYYVSCPKCKKSASAAETHFKCEFCHESVDYPITRYRLELGVKDSTGSTIFVLFDDVAEQVAQMKLVDLTATLENETEDGSSIPHQLKRIIGTIHIFQIKMKSYFEDRGRQSFTVSRIVKPKVKVEKDDKLDSECNTSKESNDVEQKEVASDLEE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03078 461 MobiDBLite consensus disorder prediction 432 461 - -
Trre7g03078 461 SUPERFAMILY Nucleic acid-binding proteins 8 119 IPR012340 -
Trre7g03078 461 CDD RPA1_DBD_C 275 440 IPR047192 -
Trre7g03078 461 SUPERFAMILY Nucleic acid-binding proteins 272 434 IPR012340 -
Trre7g03078 461 Gene3D - 258 439 IPR012340 -
Trre7g03078 461 CDD RPA1_DBD_A_like 21 110 - -
Trre7g03078 461 Pfam Replication protein A OB domain 137 235 IPR031657 -
Trre7g03078 461 Pfam Replication factor-A C terminal domain 292 432 IPR013955 -
Trre7g03078 461 Gene3D - 8 117 IPR012340 -
Trre7g03078 461 Gene3D - 119 257 IPR012340 -
Trre7g03078 461 SUPERFAMILY Nucleic acid-binding proteins 125 251 IPR012340 -
Trre7g03078 461 CDD RPA1_DBD_B_like 154 250 - -
Trre7g03078 461 PANTHER OS03G0429900 PROTEIN 16 433 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03078 Trre-Chr7 28356305 28358752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03078 10 426 Core DNA Replication Machinery Family AT4G19130 23.843 5.37e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03078 - - mtr:120580096 447.203