Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre7g03062 | ATGGACTCCGAGGATGATATGCATGATGCTAACGATATGGAGTCTCTTGATGACGATGATGATTTCTACAGTGGTGATACGGATGGTGCTCCCATGGATTATTACAGTGATTATGATGATGATGATGCTGGTGATTACTTCGATGATGCTGATAAGATTGAGTCTCGTCGACCTGAGCAAAACTTTACCATCTTGAAGGAATCCGATATCCGAATGAGACAGGAAGATGACATCAATACAGTAGCTGCTGTTCTTTCTGTATCAAAAGTTATTGCAAGCATATTACTTCGTCACCACAATTGGAGCGTCAGTAAAGTGCATGATGCGTGGTTTGCTGATGAAGAGCAAGTCCGAAAAGCGGTTGGCTTGTTGGATGAGCCAGTTGTCCTGCATCCTAATGCTAGAGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGTTCTGGGATTGAAATGGCTTCTTGTGGCCATCCATACTGTTTCTCATGCTGGGAAGGATATATCAGTACGTCCATTAATGACGGTCCTGGATGTTTGATGTTGAGATGTCCTGATCCCTCTTGTGGTGCTGCTATTGGTCAAGATATGATTGATTTATTAGCATCTAATGAAGATAAACAAAAGTATGACCGATACCTTCTTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCTGTTACTTTTGATGCTGGAGGCGGAAATTATGATGTCTCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATCATGAAAAACAGCGCAGAGTCCGAAAACATGAACTGGATACTTGCTAACTCAAAACCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATCACGTGCACTCCTCCCTGTAAATTTGAATTTTGTTGGCTATGCCTTGGTGCATGGTCAGACCATGGCGAAAGAACCGGTGGTTTCTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGATATACACATTATTATGAACGTTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGATCAGATGCAAACTGTTCATATTGAGACGCTTAGTGACATTCAGTGCCAACCTGAGTCACAGCTTAAGTTCATTACGGAGGCCTGGCTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACATATGCATATGGATACTATTTACCTGAGCATGAGCGTGCAAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTAGAGAGACTTCATCAGTGTGCTGAAAAAGAATTACAGCAATTCCTCAATGCTGAAGAAGGCCCATCTAAAGAATTCAATGATTTCCGTACAAAGTTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGGGCTTTAGAGAATGGTCTATCCGATGTGGATGGTAATGGAGCTGTCTTCAGCAAAGCAACAAGCTCAAAAAATGCAGCAGGGAGCAGCAAGGCGAGAGCAGCGAGAATGCGAACCAGCAGAACGGGTGAGGAGGGTCTCTGGTCCTGTGAGCATTGTACCTCTGTGAACGCCAGATCTTCATCCACATGCCAGATTTGCAATCAACGTAGATGA | 1752 | 0.4315 | MDSEDDMHDANDMESLDDDDDFYSGDTDGAPMDYYSDYDDDDAGDYFDDADKIESRRPEQNFTILKESDIRMRQEDDINTVAAVLSVSKVIASILLRHHNWSVSKVHDAWFADEEQVRKAVGLLDEPVVLHPNARELTCGICFENYPRSGIEMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPDPSCGAAIGQDMIDLLASNEDKQKYDRYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLDQMQTVHIETLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERAKKQFFEYLQGEAESGLERLHQCAEKELQQFLNAEEGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDGNGAVFSKATSSKNAAGSSKARAARMRTSRTGEEGLWSCEHCTSVNARSSSTCQICNQRR | 583 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre7g03062 | 583 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 69 | 436 | IPR031127 | GO:0004842|GO:0016567 | |
Trre7g03062 | 583 | SUPERFAMILY | RING/U-box | 135 | 220 | - | - | |
Trre7g03062 | 583 | Pfam | Ariadne domain | 357 | 519 | IPR045840 | - | |
Trre7g03062 | 583 | CDD | BRcat_RBR_ANKIB1 | 215 | 279 | - | - | |
Trre7g03062 | 583 | Gene3D | - | 266 | 522 | - | - | |
Trre7g03062 | 583 | FunFam | RBR-type E3 ubiquitin transferase | 133 | 222 | - | - | |
Trre7g03062 | 583 | ProSitePatterns | Zinc finger RanBP2-type signature. | 560 | 579 | IPR001876 | - | |
Trre7g03062 | 583 | ProSiteProfiles | TRIAD supradomain profile. | 135 | 348 | IPR044066 | - | |
Trre7g03062 | 583 | FunFam | RBR-type E3 ubiquitin transferase | 271 | 522 | - | - | |
Trre7g03062 | 583 | SMART | ibrneu5 | 283 | 344 | IPR002867 | GO:0008270 | |
Trre7g03062 | 583 | SMART | ibrneu5 | 208 | 270 | IPR002867 | GO:0008270 | |
Trre7g03062 | 583 | CDD | Rcat_RBR_ARI7-like | 293 | 347 | - | - | |
Trre7g03062 | 583 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 556 | 583 | IPR001876 | - | |
Trre7g03062 | 583 | SMART | zf_4 | 558 | 582 | IPR001876 | - | |
Trre7g03062 | 583 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Trre7g03062 | 583 | SUPERFAMILY | RING/U-box | 289 | 337 | - | - | |
Trre7g03062 | 583 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 221 | IPR013083 | - | |
Trre7g03062 | 583 | Pfam | IBR domain, a half RING-finger domain | 208 | 270 | IPR002867 | GO:0008270 | |
Trre7g03062 | 583 | Pfam | IBR domain, a half RING-finger domain | 287 | 335 | IPR002867 | GO:0008270 | |
Trre7g03062 | 583 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Trre7g03062 | 583 | CDD | RING-HC_ARI6-like | 136 | 197 | - | - | |
Trre7g03062 | 583 | ProSiteProfiles | Zinc finger RING-type profile. | 139 | 183 | IPR001841 | - | |
Trre7g03062 | 583 | SUPERFAMILY | RING/U-box | 209 | 277 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre7g03062 | Trre-Chr7 | 27920229 | 27927070 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre7g03062 | 16 | 583 | ARIADNE family | AT1G65430 | 69.043 | 0.0 | 825 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre7g03062 | K11968 | - | gmx:100784195 | 1031.55 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre11g04508 | 11 | 57329298 | 57335201 | Trre7g03062 | 7 | 27920229 | 27927070 | PCT |