Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03042 ATGGGGCATAAAAAGAAGCGTGGAGGAGGAAGTGGAGGAAGAAGAAACAAAGCAAGAACACCTTCCAAAGATCACACTTCTCCGTTCAGTCACGACGATTATAACGAACAACTCTCCGAAGAGATTACTGCACTATGTTCGATTTTTCAAGAGGATTGTGAATTTGTTCCTGGTTCGCCTCCTCAAGTAGTTATTAAGCTAAGGCCTTACTCGAATGACATGGGTTATGAGGATGTAGATGTTTCTGCTGTCCTTGTTGTTAGGTGCTTGCCTGGGTACCCCTTCAAGTGTCCCAAGTTGCAGATTACTCCTGAGATGGGTTTATCAGAAACTGATGCTAATAAACTTTTGTCTCTCCTCCTTGATCAGGCTAGTTTAAACGCCAGGGAGGGACGAGTAATGATCTTCAATTTAGTTGAGGCTGCTCAAGAATTTCTGTCTAGAATTGAGCCTATTGCCAAACCAACTGAATCCAAGTTTTTGCACGCAACTACAGAAGGCATTGAAGAATTGTGTCTCAAGGATGTGACATCTTCAAATAAGAATAGATCTTTTGTTTATGGTTTCATCGACCTTTTCAGTGGCTATGGGGAGTCCTGGAATTGGAGTTTTGGAATTGATGAAACTGCTGTAAAAAGTTCTTCTCTTCCTTCCTCTAAGTTAGATGCCTCCAAGCCACGAATAGAAGCCCGGGAAAAGAAATCTGATAGCAAGGAAAACCCGTCCATATTGCAAGAACTTCCTGCCAAATTAGATACTGTTGGAGAAGTTAGTGAAGACAGTAACAATTGCTTATCTTTGACTCGTTCAAGTAGTTCAAGTAGATCTCTGATGGATGGTTCTGATTCTGTAGGGGACGACAATGAAGGTGAGAAAGAGTATTTTATTGTAGATGAGTATACAACAGAAGATAACAAAGGCATGTCAGGAAGTGAGTCTACAGAGTCTCTTTCTTCTGCATCCTCGCCTCATCACCAAGAAACATCTCAAACAATAGAGAAGGATCTAATAATGGTTCACATGCTTCGCCTTGTTTGTGCCTCTAAAGGTACCTTGGCCGACTCTTTGCCGCAATTAGCAACAGAGCTGTACAATTTAGGGATCTTTTCTGACTCAGCACGTGATATGGCATCAAAACCGCCTTCCCTTTTCAACAAAACCTTTGATCATATCTTCAAGAAACACCTGGCATCATCCAGAATATCTCAATTTTGGACACCTTCTAATGCTGGAGACTCTAATACAGTTCACCATAGTTCTCGATATTTAAATGATTTTGAGGAGCTACGACCTCTTGGTCATGGTGGTTTTGGCCACGTTGTGTTGTGCAAAAATAAACTCGATGGAAGGCAGTATGCAATGAAAAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGGATATTAAGGGAGGTTGCTACACTTTCTCGATTACAACATCAACATGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTACTGATTCTTATGGTGATTCTGCTGGGGATTCAAGGACTCCAGCGAGTTCTACTTTCAGCTACAATGGGACAAGGTCCAATGATGCTGTTGGGCGTGAGAATCAACTTGAATCAACATATCTTTATATACAAATGGAGTACTGTCCCATGACTCTTCGCCAGATGTTTGAATCATATAATCATTTTGACAAAGAATTGGCATGGCATTTGTTTCGCCAAATAGTAGAAGGATTGGCACATATACATGGACAAGGAATAATTCATCGGGACTTGACACCAAATAACATATTCTTTGATGCTCGTAATGATATTAAAATCGGTGACTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATCTTGCACATCCTGATACAACTGGAGTTTCCATTGATGGCACTGGACAAGTTGGGACATATTTTTATACAGCTCCTGAAATTGAGCAAGGATGGCCTAAGATTGATGAAAAGGCTGACATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCATCCATTTGGGATCGCAATGGAGAGACACGTTGTTTTATCCGATCTAAAGCAAAAAGGGGAACTTCCACCTGCTTGGGTTGCTGAGTTTCCAGAACAGGAATCTTTGCTGCGGCAGTTATTGTCTCCAGGTCCCATAGATCGCCCATCTGCCACTGAACTTCTACACAATGCATTTCCTCCACGAATGGAGTCTGAATTGTTGGATGATATCTTGCGAACAATGCAGAAATCAGAGGATAGAAGCATTTACGATAAAGTTTTAAATGCTATCTTTGATGAAGAGATGTTAAGCACAAAACACATTCATCAGGTTGGCAGATTGGGGTCAGTTGGAGATAGTAGTTCATCAATTCAGCACACAGATCTTGTAACTGAGGTTCGAGATTATGTTGTAGAAGTCAACAAGGAAATTTTCAGGCAGCATTGTGCTAAACACCTAGAAATATCACCAGTGCAATTATTGGATGATTGTCCACAATTTAATAGAAATGCAGTTAAACTTTTGACTCAAGGAGGAAACATGCTTGAACTCTCCCATGAGCTGCGTTTGCCGTTTGTGAACTGGATTATATCTAACCAGAAATCTTCATTCAAACGATATGAGATATCATATGTCTACAGAAGAGCAGTTGGGCATTCATCACCAAACCGCTACCTTCAGGGAGATTTTGACATAATTGGTGGTACTTCAGCATTGACCGAGGCCGAGGTCATAAAGGTGATATTTTCTACTGTATCCTTGTAG 2754 0.411 MGHKKKRGGGSGGRRNKARTPSKDHTSPFSHDDYNEQLSEEITALCSIFQEDCEFVPGSPPQVVIKLRPYSNDMGYEDVDVSAVLVVRCLPGYPFKCPKLQITPEMGLSETDANKLLSLLLDQASLNAREGRVMIFNLVEAAQEFLSRIEPIAKPTESKFLHATTEGIEELCLKDVTSSNKNRSFVYGFIDLFSGYGESWNWSFGIDETAVKSSSLPSSKLDASKPRIEAREKKSDSKENPSILQELPAKLDTVGEVSEDSNNCLSLTRSSSSSRSLMDGSDSVGDDNEGEKEYFIVDEYTTEDNKGMSGSESTESLSSASSPHHQETSQTIEKDLIMVHMLRLVCASKGTLADSLPQLATELYNLGIFSDSARDMASKPPSLFNKTFDHIFKKHLASSRISQFWTPSNAGDSNTVHHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAMKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVTDSYGDSAGDSRTPASSTFSYNGTRSNDAVGRENQLESTYLYIQMEYCPMTLRQMFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDLAHPDTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGIAMERHVVLSDLKQKGELPPAWVAEFPEQESLLRQLLSPGPIDRPSATELLHNAFPPRMESELLDDILRTMQKSEDRSIYDKVLNAIFDEEMLSTKHIHQVGRLGSVGDSSSSIQHTDLVTEVRDYVVEVNKEIFRQHCAKHLEISPVQLLDDCPQFNRNAVKLLTQGGNMLELSHELRLPFVNWIISNQKSSFKRYEISYVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVIFSTVSL 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03042 917 ProSiteProfiles RWD domain profile. 40 149 IPR006575 GO:0005515
Trre7g03042 917 FunFam eIF-2-alpha kinase GCN2 29 155 - -
Trre7g03042 917 SUPERFAMILY Class II aaRS and biotin synthetases 794 913 IPR045864 -
Trre7g03042 917 FunFam eIF-2-alpha kinase GCN2 414 542 - -
Trre7g03042 917 Gene3D Ubiquitin Conjugating Enzyme 27 155 IPR016135 -
Trre7g03042 917 SUPERFAMILY UBC-like 33 146 IPR016135 -
Trre7g03042 917 MobiDBLite consensus disorder prediction 1 33 - -
Trre7g03042 917 Gene3D Bira Bifunctional Protein; Domain 2 789 916 IPR045864 -
Trre7g03042 917 FunFam eIF-2-alpha kinase GCN2 546 738 - -
Trre7g03042 917 MobiDBLite consensus disorder prediction 285 300 - -
Trre7g03042 917 SMART RWD2001b 40 149 IPR006575 GO:0005515
Trre7g03042 917 CDD STKc_EIF2AK4_GCN2_rpt2 419 725 - -
Trre7g03042 917 ProSitePatterns Protein kinases ATP-binding region signature. 432 455 IPR017441 GO:0005524
Trre7g03042 917 Gene3D Transferase(Phosphotransferase) domain 1 545 736 - -
Trre7g03042 917 MobiDBLite consensus disorder prediction 224 240 - -
Trre7g03042 917 MobiDBLite consensus disorder prediction 304 327 - -
Trre7g03042 917 MobiDBLite consensus disorder prediction 215 243 - -
Trre7g03042 917 Pfam Protein kinase domain 426 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g03042 917 Pfam RWD domain 36 146 IPR006575 GO:0005515
Trre7g03042 917 MobiDBLite consensus disorder prediction 262 281 - -
Trre7g03042 917 SUPERFAMILY Protein kinase-like (PK-like) 422 739 IPR011009 -
Trre7g03042 917 MobiDBLite consensus disorder prediction 262 329 - -
Trre7g03042 917 ProSiteProfiles Protein kinase domain profile. 426 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g03042 917 MobiDBLite consensus disorder prediction 17 33 - -
Trre7g03042 917 Gene3D Phosphorylase Kinase; domain 1 413 542 - -
Trre7g03042 917 ProSitePatterns Tyrosine protein kinases specific active-site signature. 581 593 IPR008266 GO:0004672|GO:0006468
Trre7g03042 917 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 86 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03042 Trre-Chr7 27594586 27606043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03042 415 728 MAP Kinase Kinase Kinase AT1G63700 25.926 1.21e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Trre7g03042 Pkinase 5.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03042 K16196 - gmx:100797996 1427.54