Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03028 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCTGCTACGGTTATTTGTTGTGCAGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAACAAGCTTGCTAGCAAGCATCAAAGGCTTCTTCTTCAATGTTTATCTAACAAGCTTCCCAAATGTGATATATGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTGTTCTGCAAAGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCCGCAAACCACCAGCGCTTCCTCGCTACTGGTATCCGCGTGGCTTTGGGTTCTAGTTGCACCAAAGACAATGAGAAAAGCCAAGTTGAACCATCTAATCCAGACACACAACATGTTCCTGTCAAAGTTCCTCCTCAGCAAGTACCTAGTTTCACATCATCTTGGGCTGTTGATGACCTGTTGCAATTTACAGATTTCGATTCACCAGACAAAAAGCAATCCCTAGAGTTTGGAGAGCTTGAATGGCTATCAGATGCAGGTCTATTCAATGAACAGTTTCCTCATGAAGGTTTAGCTGCAGCTGAAGTTCCTCAACTTTCCATAACGCACACTAGCAATGTTGCTTCATACAAAGCGCCTAAATCCTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCGACATAAGGACGATGATGATGAGCACTTCACAGTGCCTGATCTCGGTTAA 720 0.425 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATGIRVALGSSCTKDNEKSQVEPSNPDTQHVPVKVPPQQVPSFTSSWAVDDLLQFTDFDSPDKKQSLEFGELEWLSDAGLFNEQFPHEGLAAAEVPQLSITHTSNVASYKAPKSYMSYKKPRIEVRHKDDDDEHFTVPDLG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03028 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre7g03028 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Trre7g03028 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre7g03028 239 CDD Bbox1_BBX-like 5 47 - -
Trre7g03028 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Trre7g03028 239 CDD Bbox1_BBX-like 56 98 - -
Trre7g03028 239 Gene3D Classic Zinc Finger 1 97 - -
Trre7g03028 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Trre7g03028 239 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Trre7g03028 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03028 Trre-Chr7 27526729 27528848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03028 1 161 Orphan Transcription Factor Family AT1G06040 67.262 5.02e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Trre7g03028 zf-B_box 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03028 - - gmx:100779183 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04535 11 57478008 57479589 Trre7g03028 7 27526729 27528848 PCT