Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03020 ATGCCGCTTCCGACGAAACCAACGAGGCCACTCCATGAAACCGGCCGAGACTCGGAGGAATCGTCTACCCCTTCGAACAACCTATGGGTTGGAAATCTAACGCCAGACGTTAGAGATTCCGATCTGATGGATCTATTCGCTCAATACGGCGCTCTCGATAGCGTTACATCTTATTCCGCTCGCAGTTACGCTTTCGTGTTCTTCAAACGTATCGAAGATGCAAAAGCCGCTAAAAACGCTCTTCAAGGATTCTCTTTTCGTGGCAATTCATTGAAAATTGAGTTTGCTAGACCGGCAAGGCCATGTAAACAACTCTGGGTGGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACTTAGAAGCTGACTTCCGTAAATTTGGTAAAATTGAGGATTACAAGTTCATCAGAGACAGAAATACTGCATGTGTTGAGTTTTTCAATTTGGACGATGCTATTCAGGCAATGAAAAGTATGAATGGAAAACGTATCGGCGGGGAAAATATTCGTGTCGACTTCCTCCGGTCAAATTCTACAAAAAAAGATCAATTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCGGGCCTACTGATTCCTATTCTGGACAAAAAAGGCCACTGAATTCACAGCCTCAAATGGGGAGGAAGGGTGATGGTCAACCCAGTAATATTTTGTGGATCGGTTATCCTCCCAATGTTCAGATTGATGAGCAAATGCTCCACAATGCGATGATTCTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAATTATTCATTCGTTGAGTTTAGAAGTGTCGATGAAGCCCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTCTTCAATGATCCTCGCATAACAATTAATTTTTCAAATGGTGACCAGGCGCATGGCAAAGATTACCCTGGCTTTTATCCTGGAAGTAATGGGCCAAGACCTGATTTATTCCTAAATGAGCATTCATATCGACCGTTACAAATGGATTTATTCGGTCATAATCGTCCTATGGTTCCGAATAATTTTCCTGGACATTTGCCAACTGGCGGTATTGTTGGTCCAAACATACAAATGCGCCCTTTTGGTCCTCAAAGTGGCCCTGAATCTGTTGTTTCTGGCCCTGAGTTTAACGAGAATAGTACACTACACAAATTTCAGGATGGTAGCTCGGCAAATAAGATGGGTTCAAACTGGAAAAGACCATCTCCTCCTGCACCAGGGTTGCTTTCTTCTCCTGTACCAGGTGCTAGGCTTCCTGCAAGATCAACCTCTGGTGCATGGGATGTACTTGACGTAAACCATAATCCTAGAGATTCTAAGCGCTCTAGGATAGATGGTGCATTACCTAATGATGATCCTTATGGAGGAAGGGGCATCCTTGGACCAGCAAGCATGAGGAATACAGGTGGAGTACATTCTTCAGTCCAACCTGGTAGTCTTGATCATATATGGCGCGGACTTATTGCAAAAGGTGGAACGCCTGTTTGTCGTGCTAGATGTGTGCCTGTTGGGAAAGGGATTGGGACAGAGCTTCCTGAAGTTGTTGATTGCTCAGCTAGAACGGGATTGGACACACTTGAAAAACACTATGCTGAAGCCATTGACTTCGAGATTGTTTTCTTTCTGCCTGATAGCGAAGAGGATTTTGCTTCGTACACTGAATTCCTACGCTACCTTGGTGCAAAATATCGTGCCGGCGTTGCCAAGTTTATTGACGGTACAACTTTATTCTTGGTACCTCCTTCTGATTTCCTGACAAAAGTTTTGAAAGTCACTGGACCTGAACGTCTATATGGCGTTGTTCTCAAGTTTGCACCAGTACCAAGTGGTGCGCCTGTGCACCAACCACCGCATTTGCCTGCACCGTCAAATCAATATATGCAACAGAGGCCTCCTTCACAGGCTGAATATGATAGGAATCCTGCAAAGGAGGAACAAGTTTTGCCAATGGATTACAACAGAATGTTGCATGAGGATTCTAAGCTTCCTGCTAAACAAGTATATCCGCCTATAGGTGGGCCTCCTTCAGTTCAGTCTGCAACTCCAGATTATGCTTCAAACACTGCTGCTTCTGGGTCTCAAGCTGGAGTTGCACTGACACCCGAGCTTATTGCGACTTTAGCTTCTTTTCTTCCTACGAATGCACAATCATCTGCTACTGATGGTGCCATGTCAGCTGTAGGCTCCTCAACTGCGAAGCCTCCATTTCCTCATGTGGCACCTAATGATGGGAACCAATCTCAATTATGGAAACAGGATCATCAAACTGCAGATCAATCCATTCATCCACCTCAGCAGTTTAGGAATATGTATAACAGTCACAATGCTCATTTTCAGCCTTATCCGCCAGCATCAGGTCCTGGTCACACAGCTCAAGTCTTCTCTGGCAGTTCTCATATTCAAGACAATGCTGTTAGCCAGCAACAGCAAGGAGCTGTTTCATCCAGACACATGTCTAATTTTGTGACACCTACTCAAAGTGGACCGGTAGCTGCATCCCCCCATTTCAGTCACCAGTATCAGGCTGAAGTTCCCCCCAATACTCAGAAAGGCTATGGTGTGGTGCCGGGAAGTGATGCCTCTGTTTTATACAACTCTCAGGCTTTTCAGCAACCGAATAGTAACCCCCAGCTTTTCCAGCAACCCAATAATTCTATTAGTCAAGTTAACAGTGCTAATCCTCAGCATCAACCTGCCATGCAATATACTGCAGACCAAATAAACTCAAACCCTCACATTCAGCAGCATCCTGCCTTTGGAGTTGCTCAAGCCACCCCAGAATTAGAGGCCGATAAGAACCAGAGATACCAGACAACATTACAATTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAGCAGCAAACACAAGGAGGACATCAACAATGA 2895 0.4504 MPLPTKPTRPLHETGRDSEESSTPSNNLWVGNLTPDVRDSDLMDLFAQYGALDSVTSYSARSYAFVFFKRIEDAKAAKNALQGFSFRGNSLKIEFARPARPCKQLWVGGISPAVTKEDLEADFRKFGKIEDYKFIRDRNTACVEFFNLDDAIQAMKSMNGKRIGGENIRVDFLRSNSTKKDQLLDYGQFQGKSGPTDSYSGQKRPLNSQPQMGRKGDGQPSNILWIGYPPNVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITINFSNGDQAHGKDYPGFYPGSNGPRPDLFLNEHSYRPLQMDLFGHNRPMVPNNFPGHLPTGGIVGPNIQMRPFGPQSGPESVVSGPEFNENSTLHKFQDGSSANKMGSNWKRPSPPAPGLLSSPVPGARLPARSTSGAWDVLDVNHNPRDSKRSRIDGALPNDDPYGGRGILGPASMRNTGGVHSSVQPGSLDHIWRGLIAKGGTPVCRARCVPVGKGIGTELPEVVDCSARTGLDTLEKHYAEAIDFEIVFFLPDSEEDFASYTEFLRYLGAKYRAGVAKFIDGTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFAPVPSGAPVHQPPHLPAPSNQYMQQRPPSQAEYDRNPAKEEQVLPMDYNRMLHEDSKLPAKQVYPPIGGPPSVQSATPDYASNTAASGSQAGVALTPELIATLASFLPTNAQSSATDGAMSAVGSSTAKPPFPHVAPNDGNQSQLWKQDHQTADQSIHPPQQFRNMYNSHNAHFQPYPPASGPGHTAQVFSGSSHIQDNAVSQQQQGAVSSRHMSNFVTPTQSGPVAASPHFSHQYQAEVPPNTQKGYGVVPGSDASVLYNSQAFQQPNSNPQLFQQPNNSISQVNSANPQHQPAMQYTADQINSNPHIQQHPAFGVAQATPELEADKNQRYQTTLQFAANLLLQIQQQQQQTQGGHQQ 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03020 964 Gene3D - 100 212 IPR012677 -
Trre7g03020 964 CDD RRM_SF 105 171 - -
Trre7g03020 964 MobiDBLite consensus disorder prediction 379 398 - -
Trre7g03020 964 Pfam SPOC domain 480 596 IPR012921 -
Trre7g03020 964 Gene3D - 213 302 IPR012677 -
Trre7g03020 964 CDD RRM_SF 28 94 - -
Trre7g03020 964 MobiDBLite consensus disorder prediction 665 690 - -
Trre7g03020 964 Gene3D - 10 99 IPR012677 -
Trre7g03020 964 MobiDBLite consensus disorder prediction 622 636 - -
Trre7g03020 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Trre7g03020 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 288 IPR000504 GO:0003723
Trre7g03020 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 92 IPR000504 GO:0003723
Trre7g03020 964 FunFam Flowering time control protein FPA 18 100 - -
Trre7g03020 964 MobiDBLite consensus disorder prediction 613 640 - -
Trre7g03020 964 MobiDBLite consensus disorder prediction 190 216 - -
Trre7g03020 964 MobiDBLite consensus disorder prediction 379 474 - -
Trre7g03020 964 SMART rrm1_1 223 291 IPR000504 GO:0003723
Trre7g03020 964 SMART rrm1_1 27 94 IPR000504 GO:0003723
Trre7g03020 964 SMART rrm1_1 104 171 IPR000504 GO:0003723
Trre7g03020 964 SUPERFAMILY RNA-binding domain, RBD 199 301 IPR035979 GO:0003676
Trre7g03020 964 MobiDBLite consensus disorder prediction 719 760 - -
Trre7g03020 964 MobiDBLite consensus disorder prediction 190 220 - -
Trre7g03020 964 CDD RRM_SF 229 291 - -
Trre7g03020 964 SUPERFAMILY RNA-binding domain, RBD 24 179 IPR035979 GO:0003676
Trre7g03020 964 MobiDBLite consensus disorder prediction 742 760 - -
Trre7g03020 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 23 96 - -
Trre7g03020 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Trre7g03020 964 MobiDBLite consensus disorder prediction 434 448 - -
Trre7g03020 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Trre7g03020 964 MobiDBLite consensus disorder prediction 1 30 - -
Trre7g03020 964 FunFam Flowering time control protein FPA isoform A 101 214 - -
Trre7g03020 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 295 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03020 Trre-Chr7 27421785 27428454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03020 1 349 Eukaryotic Initiation Factors Gene Family AT4G34110 21.212 5.94e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03020 - - mtr:11412967 1604.34