Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03005 ATGAACATGGAAGATCAATTTTCCTTAAAGGACAATGGAATTAGCTTTTGGACACCATTGGATAATGGAATGAAAAGTTCAACAACTCCAGATGACTTGTTTAACAACATCTCCGAGCTTATGAACTTCGATAACTATGCCGGTTGGTGCAACAGTTCATCATCATTAACTGATCAAACTCTAACTAGTGACCTTTCATCATTTGCATATTCACCACATGATGGATTGAATTTAGTTGAACAAATTAATGGTCCATTTTATATGACAGAAATTGGTGGAAATTATAGCTCCACTAGTTATGAAGAAAAAGTACTATTACAACAGATGGAAACACAATTTGGTTTCTTAGATAATGCAAATGAAACAAATAATAATAATAATAATAATTTAGATTCACAACAAGAACAAAATGGCTCATTTGATATGTGCAATTACAGAATCTCGAAATCGCCTAGTTGGTCACTTGATGAGAGAATGATGAGTGCTTTGTCCATCTTTAAAGAATCAGCTGGTGGAGGAATATTAGCACAAGTTTGGGTACCTATAAAGTATGGTGATGAATTTGTCTTAACTACAAGTAATCAACCTTATTTACTAGACCAAAAGCTTGCAGGTTATCGAGAAGTGTCGAGGTCGTTTACATTTTCTGCAGAAATGAAAATGGGAGCTTGTTGTCCTGGACTTCCGGGCCGCGTGTTTATTTCGCATGTTCCTGAATGGACATCTAATGTTGGTTACTATCATAAATCTGAGTACTTGAGATTAGATCATGCAATTAGTCACGAGGTTCGAGGATCGATTGCTCTTCCAATATCTGATATGCACTCTGAAGTTTCATGTAGTGCTGTGCTAGAACTTGTTACTACAAAGGAAAAGCCTAATTTTGATAAAGAATTAGAATATGTTTCTCATGCACTTCAGCGTATGAATTTAAGGACTATTACTCCTCCGCGACTTCTTCCACAGTGTGTATCAAATAATAAAAGAGCTGCATTAACAGAGATAGTTGATGTGTTAAGAGCTGTTTGCCATGCACATAGATTGCCACTAGCACTGACATGGATTCCATGTTATTATAGTGAAGGAAAAGGCGAAGAATCTGAGAGATTACGGATTAAAGAAGGCCATAAAACAAACTCTGATGAAAAATGTGTGCTGTGTATTGAAGAATCGGCTTGTTATATCAACGATAAAATGGTAGAAGGATTTGTTCATGCATGTTCTGAACATCACCTTGAGGAAGGACAAGGTATATCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACCGATGTGAAAGCTTATGATATTAGTGAATATCCGCTTGTTCATCATGCGCGAAAATATAACTTGAATGCTGCAGTTGCAACTAGGTTAAGGAGTACTTATACTAATGATGATGATTATGTGTTAGAATTCTTTCTACCTATCAATATGATAGGGAGTTCAGAACAACAGCTTTTATTAGACAATTTGTCAGATACTATGAGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGAAGGTGAATTAAGAGGGATAGAAGGTTCTCAAGATGGTTTTCTAAAGGAAAATATCTCAGGGTTTTTTCCGATGTCTAAGGGGAACTCTCAGATAGCATTTAGCACTGGTGACCCTGATTTATTCCAGATGCCATTGATGACAGCTAACCTAAAAAATAATGGAATCCAAGCTTCACATAGTCAGGTAACAAGTGAATCAAGAAAGCAGGCTGAGAAAAGAAGAAATGCAGTTGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTTTGAAGGATGCTGCAAAAAAAATTGGGGTTTGTCCAACAACTCTGAAGAGAATATGCAGGCAACATGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAATCGTTCGTTGAAGAAAATACAAACTGTCCTTGATTCTGTCCAAGGAGTTGAAGGTGTGCTGAAGTTTGACCCTCACACTGGTGGATTTGTTGCAGGAGGATCAATCATCGAGCAAATTGGTACACATAATAAAAATCTCATGTTCCCCAAGAAAAGCTCTGTAGAGAACGCGGCTATTAAATTGGAGGATGATGGTGTTCTTATCTCTAATTCATGTGAGGGTGACTTGAAAAAAGATAATAATGCTTCTTCTGTTGACTATATTCAAGATTCAACATCATGGCTTTGGACGAAGACTCATGATTGTCCTAAACAAAACTCTATAGATTCTGTTCTTGAAAAAGAGGAAGATCAATGTGGTTTGAACAATAGTAGTTTGCATGATATTGCCTCTAATAGTTCTTTCTCATTGATAGAACTTGGTTTGGATGAAGGAAAAGGAGTTGATGAACCTAACCATCCTACTTCTTCAAGCATGACAGATTCTTCCAATGCATCCGGATCAATGGTTCGTGGAAGTTCATCAGGCTCTCAAAGCATTGAGAACCAGAAGAACTCAAAGGTCAAATCAATTTGTGTTGATAGTGAGTCGAAATTTGCCATCAAAGCTACTTTTAGAGGCGATACTATTCGTTTCAAGTTTGATCCATGTTTAGGTTGTTTCCAACTATATGAAGAAGTTGCAACAAGGTTCAAATTAAGGAATGGTTCATTCCAACTCAAGTATCTTGATGATGAAGAGGAATGGGTAATGTTGGTGAATGACTCAGATTTGAAGGAATGTGTAGAAGTTTTGAGCGATAGTGGTACACATTGTGTGAAGTTACTTGTTCGCGATATACATGGCGACAGTAATAGTTGA 2778 0.3686 MNMEDQFSLKDNGISFWTPLDNGMKSSTTPDDLFNNISELMNFDNYAGWCNSSSSLTDQTLTSDLSSFAYSPHDGLNLVEQINGPFYMTEIGGNYSSTSYEEKVLLQQMETQFGFLDNANETNNNNNNNLDSQQEQNGSFDMCNYRISKSPSWSLDERMMSALSIFKESAGGGILAQVWVPIKYGDEFVLTTSNQPYLLDQKLAGYREVSRSFTFSAEMKMGACCPGLPGRVFISHVPEWTSNVGYYHKSEYLRLDHAISHEVRGSIALPISDMHSEVSCSAVLELVTTKEKPNFDKELEYVSHALQRMNLRTITPPRLLPQCVSNNKRAALTEIVDVLRAVCHAHRLPLALTWIPCYYSEGKGEESERLRIKEGHKTNSDEKCVLCIEESACYINDKMVEGFVHACSEHHLEEGQGISGKALQSNHPFFYTDVKAYDISEYPLVHHARKYNLNAAVATRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEGELRGIEGSQDGFLKENISGFFPMSKGNSQIAFSTGDPDLFQMPLMTANLKNNGIQASHSQVTSESRKQAEKRRNAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIEQIGTHNKNLMFPKKSSVENAAIKLEDDGVLISNSCEGDLKKDNNASSVDYIQDSTSWLWTKTHDCPKQNSIDSVLEKEEDQCGLNNSSLHDIASNSSFSLIELGLDEGKGVDEPNHPTSSSMTDSSNASGSMVRGSSSGSQSIENQKNSKVKSICVDSESKFAIKATFRGDTIRFKFDPCLGCFQLYEEVATRFKLRNGSFQLKYLDDEEEWVMLVNDSDLKECVEVLSDSGTHCVKLLVRDIHGDSNS 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03005 925 MobiDBLite consensus disorder prediction 564 584 - -
Trre7g03005 925 Gene3D - 833 917 - -
Trre7g03005 925 MobiDBLite consensus disorder prediction 785 821 - -
Trre7g03005 925 ProSiteProfiles PB1 domain profile. 837 919 IPR000270 GO:0005515
Trre7g03005 925 SMART PB1_new 837 919 IPR000270 GO:0005515
Trre7g03005 925 MobiDBLite consensus disorder prediction 790 821 - -
Trre7g03005 925 Coils Coil 116 136 - -
Trre7g03005 925 ProSiteProfiles RWP-RK domain profile. 577 658 IPR003035 -
Trre7g03005 925 Pfam PB1 domain 838 918 IPR000270 GO:0005515
Trre7g03005 925 Pfam RWP-RK domain 590 638 IPR003035 -
Trre7g03005 925 SUPERFAMILY CAD & PB1 domains 833 921 - -
Trre7g03005 925 PANTHER PROTEIN NLP8 98 920 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03005 Trre-Chr7 27204541 27208286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03005 3 919 NLP Transcription Factor Family AT2G43500 47.737 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre7g03005 PB1 2.7e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03005 - - aprc:113864503 1196.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04556 11 57631231 57636601 Trre7g03005 7 27204541 27208286 PCT