Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02989 ATGCCTTCTCCTTCATTTCACAAGCTTGTTCTACCCTCCACTCTTCAAGCTAAGAAACTGAGGCTTCCAGATGATTTTGTGAAGCAATATGGGGGCAATATTTCTTCGATTGTTACTCTCACAGTTCCTGATGGCAGCATATGGCGTGTAGGATTAAAAAAAGAAGACAACAAATTTTGGTTACTCGATGGTTGGCATGATTTTGTTCAACACTATTCCATTGGTATCGGATACTTGTTGTTATTCAGATATGAAGGAAGGTCATGTTTCATTGTTAATATTTACAGTTTTGGTACTTCTGAGATTAACTATGAATCACCCGCACAAAGCAGTAACGAAGCGCCTCACCGTGCAAAACATCTTGCTATTTTGGAAGATGTGGAAGACGAGGATCTAAACTTAGGAGAAGCTGGAAATACTCCTTCTTCCAAAAGTGCCAAATCGCCAGACAACCAGATGACCCGAGATAAAGGTCTCCAGTTTAATGAAATTGAGTTTGAAAAGTCTACTGAAGAGGTGAAGTTGCGTACGGCTACTGATGAAAAGGTTAAAAGAACGAGGACAAAGAAGCGGAAATCAGATGTCCAGGAACGTCCTTCTGAACATGAAGATGAAGTAGAAATGCGCAATAGTTACGAAAGTGCATCTGCAAGGAAAAGAACTGTGACCGATGAAGAAAGAAAAAGGGCTAGGAATGAAGCAGAAGCATTTGAACCATCTAATCCTTTCTGCCGCGTCATCCTGCGGCCGTCCTATTTATATAGGGGATGCATAATGTATCTACCATCCTGCTTTGCAGAGAAGCATTTGAATGGTATTTCAGACAATATCAAGCTTCAAATCTCTGATGGTGAGAAACAGTGGTCGGTTCGCTGTGTTTATAAAGATGGAAAAGCTAAGTTAAGCCAAGGGTGGTTTGATTTTGCGTTAGAGAACAATTTAGGTGAAGGAGATGTCTGTGTTTTTGAGCGGCTTGCAGCGGAGGAAGTAGTGCTGCATGTTACTTTTTTCCGTATTACTGAGGATGAATAA 1032 0.4089 MPSPSFHKLVLPSTLQAKKLRLPDDFVKQYGGNISSIVTLTVPDGSIWRVGLKKEDNKFWLLDGWHDFVQHYSIGIGYLLLFRYEGRSCFIVNIYSFGTSEINYESPAQSSNEAPHRAKHLAILEDVEDEDLNLGEAGNTPSSKSAKSPDNQMTRDKGLQFNEIEFEKSTEEVKLRTATDEKVKRTRTKKRKSDVQERPSEHEDEVEMRNSYESASARKRTVTDEERKRARNEAEAFEPSNPFCRVILRPSYLYRGCIMYLPSCFAEKHLNGISDNIKLQISDGEKQWSVRCVYKDGKAKLSQGWFDFALENNLGEGDVCVFERLAAEEVVLHVTFFRITEDE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02989 343 Gene3D - 1 97 IPR015300 -
Trre7g02989 343 CDD B3_DNA 242 338 IPR003340 GO:0003677
Trre7g02989 343 Gene3D - 221 341 IPR015300 -
Trre7g02989 343 Pfam B3 DNA binding domain 8 95 IPR003340 GO:0003677
Trre7g02989 343 Pfam B3 DNA binding domain 247 338 IPR003340 GO:0003677
Trre7g02989 343 CDD B3_DNA 4 96 IPR003340 GO:0003677
Trre7g02989 343 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Trre7g02989 343 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Trre7g02989 343 PANTHER B3 DOMAIN-CONTAINING 3 328 - -
Trre7g02989 343 ProSiteProfiles B3 DNA-binding domain profile. 244 340 IPR003340 GO:0003677
Trre7g02989 343 SMART B3_2 6 98 IPR003340 GO:0003677
Trre7g02989 343 SMART B3_2 244 340 IPR003340 GO:0003677
Trre7g02989 343 MobiDBLite consensus disorder prediction 190 227 - -
Trre7g02989 343 MobiDBLite consensus disorder prediction 136 158 - -
Trre7g02989 343 MobiDBLite consensus disorder prediction 133 227 - -
Trre7g02989 343 SUPERFAMILY DNA-binding pseudobarrel domain 237 339 IPR015300 -
Trre7g02989 343 MobiDBLite consensus disorder prediction 160 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02989 Trre-Chr7 27040479 27042646 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02989 1 341 B3 DNA Binding Superfamily AT3G18990 52.890 3.83e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre7g02989 B3 5.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02989 - - gmx:100813285 448.743