Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02986 ATGCCTTCTCCTTCATTTCACAAGCTTGTTCTACCTTCCACTCTTCAAGCTAAGAAACTGAGGCTTCCAGATGATTTTGCGAAGAAATATGGGGGAAATATTTCTTCGATTGTTACTCTCACAGTTCCTGATGGAAGCGCTTTTGCTACTTCTGAGATTAACTATAAATCACCCGAACAAAGCAGTAACAAAGCGCCTCACTTTGCAAAACGTCTTGAAGTTTTTGAAGATTTGGAAGATGAAGATTCCATTGAAATGATGCATTTGTCGCCTACAAACCTTACACATAGCCCATTGCAAAACAAAGCTGTTTCTGGATCAGCCGATAAAGTCACGCCTGGCAAGTCTCATTCGCCTCCAGCACTGAAGAATCTTTTTAATGGATCTAAACTTAATAGCCTAGACAACCAGATGACCCGAGATGTAGGTCTCCAGTTTAATGTAGTTGAGTTTAAAAAGTCTACTGAAGAGGTGAAGTTGCGTACGGCTACTGATGAAAAGGTTAAAAAGACGGGGACAAAGAAGCGGAAATCAGATGTCCTGGAACCTCCTTCTGAACATGAAGATGAAGTAGAAATGCGCAATCGATTCTACGAAAGTGCATCAGCTAGGAAAAGAACTGTGACAGCTGAAGAAAGAGAAAAGGCTATGAATGAAGCAAAAGCATTTGAACCATCTAATCCTTTCTGTCGTGTCGTCCTGCGGCCCTCCTATTTATATAGGGGATGCATAATGTATCTACCATCCTGCTTTGCAGAGAAGCATTTGAACGGTATTTCAGGCTTTATAAAGCTTCAAATCTCTGATGGTGGGAAACAGTGGTCGGTTCGCTGTCTTTATAAAGACGGTAAAGCTAAGTTAAGCCAAGGGTGGTTTGAATTTGCATTAGAGAACAATTTAGGTGAAGGAGATGTCTGTGTGTTTGAGCTGGTTGCAGCGGACGAAGTAGTGCTGCAAGTCACTTTTTTTCGTATTACTGAGGATGAAGGACTGTCGAGCCCGCCGCCTTTGCAGCAAAACCAACATGTGACCACTGCTAAACTATTAAAAGTCCCTTTCAGCATGACCTGA 1071 0.4211 MPSPSFHKLVLPSTLQAKKLRLPDDFAKKYGGNISSIVTLTVPDGSAFATSEINYKSPEQSSNKAPHFAKRLEVFEDLEDEDSIEMMHLSPTNLTHSPLQNKAVSGSADKVTPGKSHSPPALKNLFNGSKLNSLDNQMTRDVGLQFNVVEFKKSTEEVKLRTATDEKVKKTGTKKRKSDVLEPPSEHEDEVEMRNRFYESASARKRTVTAEEREKAMNEAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGISGFIKLQISDGGKQWSVRCLYKDGKAKLSQGWFEFALENNLGEGDVCVFELVAADEVVLQVTFFRITEDEGLSSPPPLQQNQHVTTAKLLKVPFSMT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02986 356 SMART B3_2 230 326 IPR003340 GO:0003677
Trre7g02986 356 CDD B3_DNA 228 324 IPR003340 GO:0003677
Trre7g02986 356 MobiDBLite consensus disorder prediction 163 190 - -
Trre7g02986 356 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 145 333 IPR044837 -
Trre7g02986 356 Gene3D - 1 75 IPR015300 -
Trre7g02986 356 ProSiteProfiles B3 DNA-binding domain profile. 230 326 IPR003340 GO:0003677
Trre7g02986 356 SUPERFAMILY DNA-binding pseudobarrel domain 3 46 IPR015300 -
Trre7g02986 356 SUPERFAMILY DNA-binding pseudobarrel domain 223 325 IPR015300 -
Trre7g02986 356 Gene3D - 207 328 IPR015300 -
Trre7g02986 356 Pfam B3 DNA binding domain 233 324 IPR003340 GO:0003677
Trre7g02986 356 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02986 Trre-Chr7 26985185 26987530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02986 1 330 B3 DNA Binding Superfamily AT3G18990 45.052 3.13e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre7g02986 B3 9.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02986 - - gmx:100813285 454.521