Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02931 ATGGACGATTACGGTAGCAGCGACGACGATTATCAATTCTCCGATCAAGAAGATTCCGATGTCGAATTAATCGAAAACGACGATCGCAATTTTCAATTACTGTCTTCTAAGGCTCCCACTGCTCAGGTGATTACGAAGGAATCATTGATAGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTTTCTGTGAGACAACAGCATGCACGCACACTGCTTATTTATCATCGTTGGGATGTGGACCATTTGTTTGAAGTTTATGTAGATAGAGGGAAGGCATTTATGTTTGCTCAGGCTGGTGTTAGTGTGGATGAATGTCGTGACTCTGACTCATCGGTTAGTGAGTTAGTAATGTGTGAAATCTGCATGGACGATGTTCCTAGTGATGAATCAACGCGAATGGACTGTGGTCATTGCTTTTGCAACACCTGTTGGACACAACATTTTTGTGTCAAGATAAATGAGGGTCAAAGTAAACGCATCAGATGCATGGCTCATAAATGTAATTCCATTTGTGATGAAGCTGTTGTAAGAACCCTACTCAGTAGAGAGCACCCTGACATGGCAGAGAAATATGAACGGTTTCTTCTTGAATCTTACATCGAAGACAATAAAAGAGTTAAATGGTGTCCGAGCACGCCACATTGTGGGAATGCAATTCGTGTCGAGGGTGATAGATTGTGCGAGTGCCGGGATGAATCTGAAACTGTTAATTGGATAACAGTTCATACAAAGCCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGTGGCTGTAATTTGGTCAGCTGTATTTGCGGTCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACCGGCCGGGAGCATACCTGGTCAAGTATAGCAGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAGAAAACAGCTGAGCGGGCCAAGAGGGATCTCTATAGGTACATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGGTCTCATACAAGGGAAGATTTCTATTTCGGAAGAAAAAAGTGCTGAACGAAAAAATACTGAAGTCAGAGATTATAGCTGGGTGAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCACATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGAAGAAATGTCAGAAGCTGAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGTTTGAAGCAAACGTTGAAAGACTTTCTAAGATTTTGGAGGAGCCTTTTGAAACCTTTGATGATGATGCTAAGGTCATGGAGATAAGGATGGAGATAATAAATCTGTCGACACTTATTGATGGTCTTTGTAAAAAAATGTATGAGTGCATTGAGAATGATTTATTGGATTCTGTTAATCTTGGTAGTATCCACAGTATAGCACCATATAAATCAAAGGGCATAGAGAGGGCTTCAGAGCTTCCAGTTTGTTTTAGCAATAAAGCCAGCAATAATACGGGTGTAACAGCAGAGCTTAATCAGTCAGAAGAGAGTGGATGTTCTTCTCGTAAGCGAGCCCGAAAAGACGGTGGCTTTTTTGATCTAAACTTGCCAGCTGAGTTTGTAGACAGAAATTGA 1644 0.4142 MDDYGSSDDDYQFSDQEDSDVELIENDDRNFQLLSSKAPTAQVITKESLIAAQKEDLRRVMDMLSVRQQHARTLLIYHRWDVDHLFEVYVDRGKAFMFAQAGVSVDECRDSDSSVSELVMCEICMDDVPSDESTRMDCGHCFCNTCWTQHFCVKINEGQSKRIRCMAHKCNSICDEAVVRTLLSREHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEGDRLCECRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKGLIQGKISISEEKSAERKNTEVRDYSWVNNGLSRLFRSRRVLSHSYAFAFYMFGDELFKEEMSEAEREIKQNLFEDQQQQFEANVERLSKILEEPFETFDDDAKVMEIRMEIINLSTLIDGLCKKMYECIENDLLDSVNLGSIHSIAPYKSKGIERASELPVCFSNKASNNTGVTAELNQSEESGCSSRKRARKDGGFFDLNLPAEFVDRN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02931 547 CDD RING-HC_RBR_TRIAD1 119 172 - -
Trre7g02931 547 SMART ibrneu5 192 295 IPR002867 GO:0008270
Trre7g02931 547 Pfam Ariadne domain 299 547 IPR045840 -
Trre7g02931 547 ProSiteProfiles TRIAD supradomain profile. 117 299 IPR044066 -
Trre7g02931 547 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Trre7g02931 547 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 380 IPR031127 GO:0004842|GO:0016567
Trre7g02931 547 SUPERFAMILY RING/U-box 241 283 - -
Trre7g02931 547 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
Trre7g02931 547 CDD Rcat_RBR_ARI1-like 243 296 - -
Trre7g02931 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 225 IPR013083 -
Trre7g02931 547 Gene3D - 226 473 - -
Trre7g02931 547 Pfam IBR domain, a half RING-finger domain 192 233 IPR002867 GO:0008270
Trre7g02931 547 SUPERFAMILY RING/U-box 116 204 - -
Trre7g02931 547 FunFam RBR-type E3 ubiquitin transferase 226 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02931 Trre-Chr7 26066017 26069766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02931 61 525 ARIADNE family AT2G16090 62.874 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02931 K11968 - gmx:100783343 910.598