Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02930 ATGGACGATTACGGTAGCAGCGACGACGATTATCAATTCTCCGATCAAGAAGATTCCGATGTCGAATTAATCGAAAACGACGATCGCAATTTTCAATTACTGTCTTCTAAGGCTCCCACTGCTCAGGTGATTACGAAGGAATCATTGATAGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTTTCTGTGAGACAACAGCATGCACGCACACTGCTTATTTATCATCGTTGGGATGTGGACCATTTGTTTGAAGTTTATGTAGATAGAGGGAAGGCATTTATGTTTGCTCAGGCTGGTGTTAGTGTGGATGAATGTCGTGACTCTGACTCATCGGTTAGTGAGTTAGTAATGTGTGAAATCTGCATGGACGATGTTCCTAGTGATGAATCAACGCGAATGGACTGTGGTCATTGCTTTTGCAACACCTGTTGGACACAACATTTTTGTGTCAAGATAAATGAGGGTCAAAGTAAACGCATCAGATGCATGGCTCATAAATGTAATTCCATTTGTGATGAAGCTGTTGTAAGAACCCTACTCAGTAGAGAGCACCCTGACATGGCAGAGAAATATGAACGGTTTCTTCTTGAATCTTACATCGAAGACAATAAAAGAGTTAAATGGTGTCCGAGCACGCCACATTGTGGGAATGCAATTCGTGTCGAGGGTGATAGATTGTGCGAGTGCCGGGATGAATCTGAAACTGTTAATTGGATAACAGTTCATACAAAGCCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGTGGCTGTAATTTGGTCAGCTGTATTTGCGGTCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACCGGCCGGGAGCATACCTGGTCAAGTATAGCAGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAGAAAACAGCTGAGCGGGCCAAGAGGGATCTCTATAGGTACATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGGTCTCATACAAGGGAAGATTTCTATTTCGGAAGAAAAAAGTGCTGAACGAAAAAATACTGAAGTCAGAGATTATAGCTGGGTGAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCACATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGAAGAAATGTCAGAAGCTGAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGTTTGAAGCAAACGTTGAAAGACTTTCTAAGATTTTGGAGGAGCCTTTTGAAACCTTTGATGATGATGCTAAGGTCATGGAGATAAGGATGGAGATAATAAATCTGTCGACACTTATTGATGGTCTTTGTAAAAAAATGTATGAGTGCATTGAGAATGATTTATTGGATTCTGTTAATCTTGGTAGTATCCACAGTATAGCACCATATAAATCAAAGGGCATAGAGAGGGCTTCAGAGCTTCCAGTTTGTTTTAGCAATAAAGCCAGCAATAATACGGAAATGTTACTGAGTGAAAAGGATTCTTGTATATATGCTGCAAGCGTAGGTGTAACAGCAGAGCTTAATCAGTCAGAAGAGAGTGGATGTTCTTCTCGTAAGCGAGCCCGAAAAGACGGTGGCTTTTTTGATCTAAACTTGCCAGCTGAGTTTGTAGACAGAAATTGA 1692 0.4125 MDDYGSSDDDYQFSDQEDSDVELIENDDRNFQLLSSKAPTAQVITKESLIAAQKEDLRRVMDMLSVRQQHARTLLIYHRWDVDHLFEVYVDRGKAFMFAQAGVSVDECRDSDSSVSELVMCEICMDDVPSDESTRMDCGHCFCNTCWTQHFCVKINEGQSKRIRCMAHKCNSICDEAVVRTLLSREHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEGDRLCECRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKGLIQGKISISEEKSAERKNTEVRDYSWVNNGLSRLFRSRRVLSHSYAFAFYMFGDELFKEEMSEAEREIKQNLFEDQQQQFEANVERLSKILEEPFETFDDDAKVMEIRMEIINLSTLIDGLCKKMYECIENDLLDSVNLGSIHSIAPYKSKGIERASELPVCFSNKASNNTEMLLSEKDSCIYAASVGVTAELNQSEESGCSSRKRARKDGGFFDLNLPAEFVDRN 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02930 563 Gene3D - 226 473 - -
Trre7g02930 563 CDD RING-HC_RBR_TRIAD1 119 172 - -
Trre7g02930 563 SMART ibrneu5 192 295 IPR002867 GO:0008270
Trre7g02930 563 Pfam IBR domain, a half RING-finger domain 192 233 IPR002867 GO:0008270
Trre7g02930 563 SUPERFAMILY RING/U-box 241 283 - -
Trre7g02930 563 SUPERFAMILY RING/U-box 116 204 - -
Trre7g02930 563 Pfam Ariadne domain 299 563 IPR045840 -
Trre7g02930 563 ProSiteProfiles TRIAD supradomain profile. 117 299 IPR044066 -
Trre7g02930 563 FunFam RBR-type E3 ubiquitin transferase 226 471 - -
Trre7g02930 563 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Trre7g02930 563 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
Trre7g02930 563 CDD Rcat_RBR_ARI1-like 243 296 - -
Trre7g02930 563 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 380 IPR031127 GO:0004842|GO:0016567
Trre7g02930 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 225 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02930 Trre-Chr7 26066017 26069766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02930 61 496 ARIADNE family AT2G16090 65.254 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02930 K11968 - gmx:100783343 900.582