Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02929 ATGGAAGAAGATTACGTTTACAGCGACAACGACGATGACAATTATCATTTCTCCGATCAAGAAGATTCCGAGCTCGAATTACTCCAAAACGATCTCCACAATTTTCAGTTGTCCTCTTCCAAAGCTTCCATTGCTCAGGTGATTACGAAGGAATCACTGATAGCTGCGCAGAATGAGGAATTGCACAGAGTGATGGACATGCTTTCAATAAGACAACAAGATGCGCGCACATTGCTTATTTATCATCGTTGGGATGTGGACCATTTGTTTGAAGTTTATGTCGAAAAAGGGAAGGAATTTATGTTTGCTCAGGCTGGTGCTAGTGTGGATAAATATCGTAACTCTGACTTGCCGGTTAGTCCTGTAGTAATGTGTGAAATCTGCATAGGCGAGGTTCCTAGTAATGAAGTAACAAGAATGGACTGTGGTCACTGGTTTTGCAACTCCTGTTGGACACAACACTTTTTAGTCAAGGTAAATGAGGGTCAAAGCAAACGCATCAGATGCATGGCTCACAAATGTAATTCAATTTGCGATGAAACTGTCATAATAACTCTACTCGGTAGAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTACATCGATGACAATAAGAGAGTTAAATGGTGTCCGAGCACGCCACATTGTGGGAATGCAATTCGTGCTGAGGGTGATGACTTGTGTGAGGTAGAATGTTCATGTGGTGAACAATTTTGTTTCAATTGCTTGTCAGAGGCACACTCCCCTTGTTCTTGTTTGATGTGGGAGCTTTGGCAACACGAGCATCGAGATGAAGTAGACTCTGATAATTGGATAATTATTCATACGAAACCTTGTCCAAAGTGCCACAAACCGGTGGAAAAGAATGGTGGTTGTAATTGGGTTGGCTGTATTTGCGGCCAACCATTTTGTTGGTTGTGTGGTGGAGCTACTGGACATGACCATACCGATTTAAGTATAGCTGGTCATGAATGTGGTCGCTACAAAGAACCCGAGAAAACAGCTGACCAAGAAAAGAGGGATCTCTATAGGTACAGACATTATTATAACCGATATAAAGCTCACATATACTCGTTTAAGTTTGAAAGCAAACTGAAAGATATCATACAAGAGAAGATTCCTATTTTTGAAGCGAAACATTCTCAACGAAAAAAATCTGAACTCGGAGATTATAGCTGGGTAAATAATGGACATTCTAGACTTCTCAGATCTAGGCGCATCCTTTCATACTCATATGCATTTGCCTTTTATATGTTTGGAGATAAGCTTTTCAAAGAGGAAATGTCAGAAGATGAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAACAGCAGTTAGAGGCAAATGTCGAAAGACTCTCTGAGATTTTGCCAGAGTCTTTCAAATCCTTACAATATGGTAAGGTTATGAAGAGAAGGATGCAGATAATAACTCTGTCAACAGTTATTGACGATCTTTGTAAGAAAATGTACTAA 1497 0.3995 MEEDYVYSDNDDDNYHFSDQEDSELELLQNDLHNFQLSSSKASIAQVITKESLIAAQNEELHRVMDMLSIRQQDARTLLIYHRWDVDHLFEVYVEKGKEFMFAQAGASVDKYRNSDLPVSPVVMCEICIGEVPSNEVTRMDCGHWFCNSCWTQHFLVKVNEGQSKRIRCMAHKCNSICDETVIITLLGRKHPDMAEKYERFLLESYIDDNKRVKWCPSTPHCGNAIRAEGDDLCEVECSCGEQFCFNCLSEAHSPCSCLMWELWQHEHRDEVDSDNWIIIHTKPCPKCHKPVEKNGGCNWVGCICGQPFCWLCGGATGHDHTDLSIAGHECGRYKEPEKTADQEKRDLYRYRHYYNRYKAHIYSFKFESKLKDIIQEKIPIFEAKHSQRKKSELGDYSWVNNGHSRLLRSRRILSYSYAFAFYMFGDKLFKEEMSEDEREIKQNLFEDQQQQLEANVERLSEILPESFKSLQYGKVMKRRMQIITLSTVIDDLCKKMY 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02929 498 Coils Coil 443 463 - -
Trre7g02929 498 SUPERFAMILY RING/U-box 196 265 - -
Trre7g02929 498 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 34 374 IPR031127 GO:0004842|GO:0016567
Trre7g02929 498 CDD RING-HC_RBR_TRIAD1 123 176 - -
Trre7g02929 498 CDD BRcat_RBR_ANKIB1 203 265 - -
Trre7g02929 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 209 IPR013083 -
Trre7g02929 498 SMART ibrneu5 196 258 IPR002867 GO:0008270
Trre7g02929 498 SMART ibrneu5 262 331 IPR002867 GO:0008270
Trre7g02929 498 SUPERFAMILY RING/U-box 121 208 - -
Trre7g02929 498 SUPERFAMILY RING/U-box 277 321 - -
Trre7g02929 498 FunFam RBR-type E3 ubiquitin transferase 254 498 - -
Trre7g02929 498 Gene3D - 254 498 - -
Trre7g02929 498 FunFam RBR-type E3 ubiquitin transferase 120 210 - -
Trre7g02929 498 Pfam Ariadne domain 336 498 IPR045840 -
Trre7g02929 498 ProSiteProfiles Zinc finger RING-type profile. 125 173 IPR001841 -
Trre7g02929 498 CDD Rcat_RBR_ARI1-like 280 332 - -
Trre7g02929 498 Pfam IBR domain, a half RING-finger domain 196 258 IPR002867 GO:0008270
Trre7g02929 498 ProSiteProfiles TRIAD supradomain profile. 121 335 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02929 Trre-Chr7 26024509 26027297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02929 65 498 ARIADNE family AT2G16090 62.100 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02929 K11968 - gmx:100808068 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02929 7 26024509 26027297 Trre7g02929 7 26024509 26027297 ECH