Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02928 ATGGAAGATTACGGTTACAGCGACAACTACGGCGATTATCATTTCTCTGATCAAGAAGATTCCGAGCTCGAATTACTCCAAAATGATGTCCACAATTTTCAGGTGCCCTCTTCTAAAGCTCCCACTGCTCAGGTAATTACAAAGGAATCACTGATAGCTGCACAGAATGAGGAATTGCACAGAGTGGTGGACATGCTTTCTATAAGAAAACAAGATGCGCGCACATTGCTTATTTATCATCGTTGGGATGTGAACCATTTGTTTGAAGTTTATGTAGAAAAAGGGAAGGAATTTATGTTTGCTCAGGCTGGTGTTAGTGTGGATAAATATCGTAACACTGGCTCGCCGGTTAGTGCTGTAGTAATGTGTGAAATCTGCATAGACAAGGTTCCTAGTAATGAAGTAACAAGAATGGACTGTGGTCACTGCTTTTGCAACTCCTGTTGGACACAACATTTTTTAGTCAAGGTAAATGAGGGTCAAAGCAAACGCATCAGATGCATGGCTCACAAATGTAATTCAATTTGCGATGAAACTGTCATAATAACTCTACTCGGTAGAAACCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTACATCGATGACAATAAGAAAGTTAAATGGTGTCCGAGCATGCCACATTGTGGGAATGCAATTCGTGCTGAGGGTGATGACTTGTGTGAGGTAGAATGTTCATGTGGTGAACAATTTTGTTTCAATTGCTTGTCAGAGACACACTCCCCTTGTTCATGTTTGATGTGGGAGCTTTGGCAACGTGATGAGCGTCGAAATGAAGTAGAATCTGATAATTGGATACTTCTTCATACGAAACCTTGTCCAACATGCCACAGACCGGTGGAAAAGAACGGTGGTTGTAATTGGGTTGGCTGTATTTGCGACCAACCATTTTGTTGGTTGTGTGGTGGACCTATTGGACACGACCATACCGATTCAGGTATAGCTGGTCATGACTGTGGTCGCTACAAAGAACCCGAGAAAACCGCAGACCAAGAAAAGAGGTATCTCCTTAGGTACAAACATTATTATAACCGATATAAAGCTCACAAAAACTCCTTTACGTTTGAAAGTAAACTGAAAGGTATCACACAAGAGAAGATTGCTATTTTCGAAGAGAAACATTCTCAATGGGAAAAATCTGAACTCAGAGATTATAGCTGGGTAAATAATGGATTCTCTAGTCTTCTCAGATCTAGGCGCATCCTTTCATACTTATATGCGTTTGCATTTTATATGTTTGGAGATGAGCTTTTCAAAGATCAAATGTCAAAAGCTGAAAAGGAAATTAAACAAAACTTATTTGAGGATCAACAACAGCAGTTAGAGGCAAATGTTGAAAGACTCTCTGAGATTTTGCAAGAGACTTTCCAATCCGTACAATATAGTACGATTATGAAGAGAAGGATGCAGATAATAACTCTGTCAACAGTTATTGACGATCTTTGTAAGAAAATGTATGAATTCATCGAGAATGATTTATTGGATTCTGTTAATCTTGGTAGTATTCACATTATAGCACCATATAATAGACCAAAAGGCATAGAGAGGGGCTTCATAGCTTCCAATTTGTTGGAGCAATAA 1614 0.3934 MEDYGYSDNYGDYHFSDQEDSELELLQNDVHNFQVPSSKAPTAQVITKESLIAAQNEELHRVVDMLSIRKQDARTLLIYHRWDVNHLFEVYVEKGKEFMFAQAGVSVDKYRNTGSPVSAVVMCEICIDKVPSNEVTRMDCGHCFCNSCWTQHFLVKVNEGQSKRIRCMAHKCNSICDETVIITLLGRNHPDMAEKYERFLLESYIDDNKKVKWCPSMPHCGNAIRAEGDDLCEVECSCGEQFCFNCLSETHSPCSCLMWELWQRDERRNEVESDNWILLHTKPCPTCHRPVEKNGGCNWVGCICDQPFCWLCGGPIGHDHTDSGIAGHDCGRYKEPEKTADQEKRYLLRYKHYYNRYKAHKNSFTFESKLKGITQEKIAIFEEKHSQWEKSELRDYSWVNNGFSSLLRSRRILSYLYAFAFYMFGDELFKDQMSKAEKEIKQNLFEDQQQQLEANVERLSEILQETFQSVQYSTIMKRRMQIITLSTVIDDLCKKMYEFIENDLLDSVNLGSIHIIAPYNRPKGIERGFIASNLLEQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02928 537 SUPERFAMILY RING/U-box 276 320 - -
Trre7g02928 537 SUPERFAMILY RING/U-box 194 263 - -
Trre7g02928 537 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 34 375 IPR031127 GO:0004842|GO:0016567
Trre7g02928 537 Coils Coil 442 469 - -
Trre7g02928 537 Pfam IBR domain, a half RING-finger domain 266 320 IPR002867 GO:0008270
Trre7g02928 537 Pfam IBR domain, a half RING-finger domain 194 256 IPR002867 GO:0008270
Trre7g02928 537 SUPERFAMILY RING/U-box 120 206 - -
Trre7g02928 537 CDD BRcat_RBR_ANKIB1 201 263 - -
Trre7g02928 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 207 IPR013083 -
Trre7g02928 537 CDD Rcat_RBR_ARI1-like 280 331 - -
Trre7g02928 537 Pfam Ariadne domain 335 527 IPR045840 -
Trre7g02928 537 SMART ibrneu5 260 330 IPR002867 GO:0008270
Trre7g02928 537 SMART ibrneu5 194 256 IPR002867 GO:0008270
Trre7g02928 537 CDD RING-HC_RBR_TRIAD1 121 174 - -
Trre7g02928 537 Gene3D - 252 507 - -
Trre7g02928 537 FunFam RBR-type E3 ubiquitin transferase 118 208 - -
Trre7g02928 537 ProSiteProfiles Zinc finger RING-type profile. 123 171 IPR001841 -
Trre7g02928 537 ProSiteProfiles TRIAD supradomain profile. 119 334 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02928 Trre-Chr7 26010689 26013579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02928 63 528 ARIADNE family AT2G16090 59.574 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02928 K11968 - gmx:100783343 757.288