Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02838 ATGTTTCTTTCATGTCAAAAACACACCCTTTACTTTCATTCTTCTTCTATCCACTCCTCAAAGAACCCAAAACTCACCATTATCATCAATTGTCATAACCCAAATGAACAACAACACAAAAACCACCTTATTCCTCGAACACAAAATTCAAAATCAACATCATTTCTCATTCAACACCTTTCACAAAAAAACAACAACAACAACACTAACCCTTCACCCACTGAGTTACAAGACTCAACAACCCATGAAGAAAAAATCAAACTTTTAGAACTTTCTTTAGTAAGAAAAAGAACCCCTCAATTTCCTGGTTCAATTTATGCTCAATCTCCTAGTGATCCTGATGTGGGTTCTTCTCTTCCTCCTCTTCGTACCCTTTTTCGATCGGGTGATCAAGAAGAGGAAGAGATGATTATGCAAGCTCTTGAGATTCGTAGGAAGGTTACTCAAGAGGTTTTTAAAGATGCAATGCGAAATGGTAAATTTGGTATTACTTATAGTACTAATTTGGTTGATAGGTTGGGTGGTTTCATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTACCGGAATATTCCAACTCCACTTTTAATTTACGCGCCAAAACTGTTATTGAAGATTCACAAGTTGTGCCACTTATCAGATGGTTGAAGCATAATTCGCTATCGTATCCAGAGATAGCTAAGCTTATTTTGATGTCAAGAGGGAAACTTGAGTCCATCAGGAACCGTGTTGAGTGGTTGAAGTCGGTGCTGGTTAAGGGAGACTTTATTGGTCGTGCAATGTTGAAGAGTGGAGATGATTTTTTGCTGCGGAGCGATGCGGAGTTGGATGAGATTGTTGAGTATTTAGTGTTAAATGGAGTTAGGAGGGAATGGATGGGTTTTGTTTTGAGTCGGTGTCCGAAGTTGTTATCTTATAGCTTGGAAGAAGTGAAGACTCGCGTGCAGTTCTATCTGGATATGGGTTTAGATGAGAAGGATTTTGGCACCATGGTTTTTGATTTTTCTAAAGCACTCGGTCACTATACTCTCGAAGAAATGCACCGAAAGGTTGATTACTTGAAAGAATTCGGACTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTAGGCCAGAATTGATGGCGTGCAGCATTGAAGAACGGTGGCAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAAGAGAATGCTTATCATTAAACCTATGGTCTTTTGCATTGACTTGGAGATGAATATTGTGCCAAAGGTAAAGTTTTTTCAGGACTTAGGGGTTCGAAATGACGGGATTGCCAACATGTTTGTCAAATTTCCTCCTCTACTCACTTACAGCCTGTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAATCTATTGGAAAGGTTATTGCTCTTGGACCTCAACTCTTGGGATGCAGCATAGTACATAAGCTCGAAGTAAATGTAAAATATTATTTATCTCTTGGCATACGTCTTCGACAACTTGGTGAAATGATTGCTGATTTCCCGATGCTGCTCAGATACAATACAGATGTTCTCCGTCCTAAGTATACGTATTTGCGGAGAACCATGGTTCGAACTTTGCAAGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTCGAGGGTCGAATTATCCCAAGACATAAGGTTCTGGTGGAGAATCAGATTAACGTCAAGTTAAAATGCATGTTAGCTTGCACAGATGAAGAATTTGACAAAATGGTCAAGAATATAATTAGAAAACGCGACACATTTCAATCTTCTTCCATGAAGGCGAATACCGCTCATCCCCAATCTCTCATTACCGGGGATATTACTACCCCCGAGACGTAA 1887 0.3937 MFLSCQKHTLYFHSSSIHSSKNPKLTIIINCHNPNEQQHKNHLIPRTQNSKSTSFLIQHLSQKNNNNNTNPSPTELQDSTTHEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLRTLFRSGDQEEEEMIMQALEIRRKVTQEVFKDAMRNGKFGITYSTNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPEIAKLILMSRGKLESIRNRVEWLKSVLVKGDFIGRAMLKSGDDFLLRSDAELDEIVEYLVLNGVRREWMGFVLSRCPKLLSYSLEEVKTRVQFYLDMGLDEKDFGTMVFDFSKALGHYTLEEMHRKVDYLKEFGLESKDVGKLLAFRPELMACSIEERWQPLVKYLYYYGITRDGMKRMLIIKPMVFCIDLEMNIVPKVKFFQDLGVRNDGIANMFVKFPPLLTYSLYKKIRPVVIFLMTKAGVTEESIGKVIALGPQLLGCSIVHKLEVNVKYYLSLGIRLRQLGEMIADFPMLLRYNTDVLRPKYTYLRRTMVRTLQDLIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFDKMVKNIIRKRDTFQSSSMKANTAHPQSLITGDITTPET 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02838 628 PANTHER CGI-12 PROTEIN-RELATED 270 370 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 SMART mt_12 403 434 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 SMART mt_12 512 542 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 SMART mt_12 439 471 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 SMART mt_12 544 575 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 SMART mt_12 476 507 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 SMART mt_12 296 326 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 SMART mt_12 367 398 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 MobiDBLite consensus disorder prediction 62 77 - -
Trre7g02838 628 Gene3D Transcription termination factor 3, mitochondrial 357 599 IPR038538 -
Trre7g02838 628 Pfam mTERF 226 358 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 Pfam mTERF 341 589 IPR003690 GO:0003690|GO:0006355
Trre7g02838 628 MobiDBLite consensus disorder prediction 62 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02838 Trre-Chr7 24732037 24734771 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre7g02838 mTERF 6.3e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02838 K15032 - mnt:21401514 818.92