Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02836 ATGGCTTCCGCAGATGTTGAATACCGTTGCTTCGTTGGTGGTCTTGCATGGGCCACTGACAGTGAAGCTCTCGAGAAAGCCTTCTCTCAGTACGGCGAGGTCATCGATTCGAAGATTATTAACGATCGTGAGACTGGAAGATCAAGAGGATTCGGATTTGTGACATTCGCGACTGAGCAATCCATGAGAGATGCGATCGAAGGAATGAACGGTCAGGACATGGGCGGACGTAACATCACTGTGAACGAAGCTCAAAGCCGTGGAAGTGGTGGAGGAGGAGGAGGCCGTGGTGGCGGTGGCGGTGGATACAGTGGTGGAGGTGGTGGTGGTGGCTATGGAGGTCGCCGTGAAGGTGGATACAGCAGAGGAGGTGGTGGTGGAGGATATGGTGGAGGTGGTTATGGTGGTGGAAGGGATCGTTCTTATGGTGGAAACGATGGTGGTTACTCCCGTGGAGGCGGTGGTGGTGGTGGAAACTGGTAG 483 0.5445 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEVIDSKIINDRETGRSRGFGFVTFATEQSMRDAIEGMNGQDMGGRNITVNEAQSRGSGGGGGGRGGGGGGYSGGGGGGGYGGRREGGYSRGGGGGGYGGGGYGGGRDRSYGGNDGGYSRGGGGGGGNW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02836 160 SMART rrm1_1 9 82 IPR000504 GO:0003723
Trre7g02836 160 MobiDBLite consensus disorder prediction 117 160 - -
Trre7g02836 160 Gene3D - 2 104 IPR012677 -
Trre7g02836 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Trre7g02836 160 PANTHER GEO13361P1-RELATED 3 155 - -
Trre7g02836 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Trre7g02836 160 CDD RRM2_NsCP33_like 9 84 - -
Trre7g02836 160 MobiDBLite consensus disorder prediction 70 105 - -
Trre7g02836 160 SUPERFAMILY RNA-binding domain, RBD 8 117 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02836 Trre-Chr7 24685941 24686747 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02836 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 31.646 3.58e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02836 - K13195 ccaj:109800369 157.147