Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02834 ATGGCCTCTTCTGATGTTGAATACCGGTGCTTCGTCGGCGGTCTTGCCTGGGGCACAGACAGTGACGCTCTTGCCAAAGCCTTTTCCTCCTACGGTGAAATCACTGATTCCAAGGTTATTAATGATCGTGAAACTGGAAGATCTAGAGGTTTCGGATTTGTGACTTTTGCTACGGAGAAATCGATGAGAGATGCAATTGAAGGTATGAACGGTCAAGATATTGATGGCCGTAATATCACTGTGAATGAAGCTCAGTCCCGTAGTAGAGGTGGAGGAGGTGGTGGTGGATATGGTGGAGGTGGCGGTGGATATGGCGGTGGTGGTCGTCGTGAAGGTGGATACAACAGAAGCAGTGGTGGTGGAGGTTATGGTAGTGGAGGAGGTGGTGGTTATGGTGGTGGTGGTAGGGATCGTGGATATGGTGGTGGCGGTGATCGTGGATATGGTGGAGGTGGTGGTGACCGTGGATATGGTGGAGGAGGTGGTGATCGTGGATATGGTGGAGGTGGCTACTCACGCGGTGGTGGTGGTGGTGGAAGCGGTGGAAACTGGAGGGATAGGGATTAG 567 0.5238 MASSDVEYRCFVGGLAWGTDSDALAKAFSSYGEITDSKVINDRETGRSRGFGFVTFATEKSMRDAIEGMNGQDIDGRNITVNEAQSRSRGGGGGGGYGGGGGGYGGGGRREGGYNRSSGGGGYGSGGGGGYGGGGRDRGYGGGGDRGYGGGGGDRGYGGGGGDRGYGGGGYSRGGGGGGSGGNWRDRD 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02834 188 MobiDBLite consensus disorder prediction 84 188 - -
Trre7g02834 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Trre7g02834 188 FunFam Glycine-rich RNA-binding protein GRP1A 2 113 - -
Trre7g02834 188 PRINTS Eggshell protein signature 13 24 - -
Trre7g02834 188 PRINTS Eggshell protein signature 92 107 - -
Trre7g02834 188 PRINTS Eggshell protein signature 118 128 - -
Trre7g02834 188 PRINTS Eggshell protein signature 158 176 - -
Trre7g02834 188 Gene3D - 2 105 IPR012677 -
Trre7g02834 188 SMART rrm1_1 9 82 IPR000504 GO:0003723
Trre7g02834 188 PANTHER GEO13361P1-RELATED 3 174 - -
Trre7g02834 188 CDD RRM2_NsCP33_like 9 84 - -
Trre7g02834 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Trre7g02834 188 SUPERFAMILY RNA-binding domain, RBD 8 115 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02834 Trre-Chr7 24662174 24662998 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02834 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 6.79e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02834 - K13195 psat:127105342 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02834 7 24662174 24662998 Trre7g02834 7 24662174 24662998 ECH