Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02788 ATGGCTCCAAAGAAGGATAAGGCTCCTCCACCTTCCTCCAAGCCAGCCAAATCTGGTGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAAGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGCTGTTTGATCAGGCTACCTATGACAAGCTGTTAACTGAAGCACCCAAATACAAGCTCATTACTCCTTCTGTTCTCTCTGATCGTTTGAGGATTAATGGATCACTTGCAAGGAGGGCTATAAGAGACTTGATGGCTAAAGGTTTAATCAGGTTGGTGTCTGCCCATGCAAGTCAGCAGATTTACACCAGGGCTACAAACACCTAG 327 0.4618 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMAKGLIRLVSAHASQQIYTRATNT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02788 108 Gene3D - 21 108 - -
Trre7g02788 108 MobiDBLite consensus disorder prediction 1 36 - -
Trre7g02788 108 FunFam 40S ribosomal protein S25 21 108 - -
Trre7g02788 108 Pfam S25 ribosomal protein 7 105 IPR004977 -
Trre7g02788 108 PANTHER 40S RIBOSOMAL PROTEIN S25 1 108 IPR004977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02788 Trre-Chr7 24152076 24153967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02788 1 108 Cytoplasmic Ribosomal Protein Gene Family AT2G21580 88.889 3.76e-55 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02788 K02975 - nnu:104587171 156.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02788 7 24152076 24153967 Trre7g02788 7 24152076 24153967 ECH