Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g02741 | ATGGCTTCCGATTCTACTCCCATGGATATCAACAACGGTCCTTCATCACCAGACAATTCCCTTTCAAGTCCAATCGCCAACACTTACTCTTCTCCTGGCCGGAGACGCCGCCGTCAATCTACTACTCCGTCAGGAACACCGCAGCCGAACAGATCTCGATTTGCTTCATCCGATGCTACACCAACTCCATCCCGCCACCGTGCAAGAGGCGCCGGCGGCGGTGTTCCGTCCGGACGTCGTGTTCCTGCCACGCCGACTTCTACTTCCGATGATATACCGATGTCATCGGAAGGCGGTGATGGTTACGACATGGATGATGCTGGTCCTACCTACGTTTGGGGGACTAATATAAGTGTGGAAGATGTGAACGATGCGATTCAGAGGTTTTTGAAGCATTTTAGGGAACGATCTAGTTCGCAGGGTGATTCTGATGATTTGGATTTGGATGTTGATGGGAAGTATGAGAAATTGATTAAACAGGTTATTGAATTAGAAGGTGAATCCATTGATGTTGATGCTCGTGATGTGTTTGATCATGATCCTGATTTGTATAATAAGATGGTGAGGTATCCTCTTGAGGTGCTTGCAATTTTTGATATGGTTTTGATGAATATGGTTACTAGAGTGAAACCAATGTTTGAGAAGCATGTTCAAACGAGGATTTTTAATCTTAAATCCTCAACTTCTATGAGAAATTTGAACCCTTCTGATATTGAGAGGATGGTATCAATGAAGGGTATGATTATTCGAAGTAGCTCAATTATACCAGAAATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCTCTGACCCGGTTCCTGTTGAGAGAGGACGAATTGCTGAACCTACTGTATGCTTGAGGGAAGAGTGTCAGTCCAGGAATTCGATGACACTTGTTCACAACCGATGCAAGTTTACTGATAAACAAATTGTGAGGCTCCAGGAGACACCTGACGAGATCCCCGAAGGAGGGACACCTCATACTGTTAGCTTGCTGTTGCATGACAAACTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATACAGGGCTATGAGTGTCAGGGTGGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAAACATATATTGATTGTCTTCACATAAAAAAGACATCAAAATCCCGGATGCTAGTTGAGGATGCTATGGAGGTTGACAATGGCCAGGGCAGAAATACAGAAGAAGTTATATTTAATGAAGAAAAGGTTGCTCAACTGAAGGAGCTCTCCAAACAACCAGATATATATGAAAGACTGACAAAGTCATTGGCGCCAAACATCTGGGAGCTAGATGATGTAAAGAAAGGTCTTCTTTGCCAGCTTTTTGGTGGCAATGCTTTGAAGTTGGCATCTGGTGCTAGCTTCCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGTACAAGTAAGTCACAGCTACTTCAGTACATACACAAACTATCTCCGCGTGGAATTTACACCAGTGGAAGGGGGAGCTCAGCTGTTGGATTGACTGCTTATGTGGCCAAAGATCCTGAAACAGGCGAAACTGTTCTTGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATTTGCTGCATAGATGAATTTGACAAGATGTCTGACAATGCAAGGAGTATGTTACACGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAGGCAGGCATTATTGCTTCGCTCAATGCTAGGACTTCAGTGTTGGCTTGTGCAAACCCTAGTGGGTCACGATATAATCCCCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTATCCAGGTTTGATTTGATTTACTTAATGCTTGACAAGGCTGATGAACAGACTGACAGACGACTTGCCAAACATATTGTATCCCTACACTTTAAGGATTATGAGAACATGGAGCAGGATGTGTTGGACCTTTCTACACTAACTGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAGCTATCAGATGAAGCTGCTGATGAATTGATTACAGGCTATGTAAAAATAAGGGGTAGGGGAAAATTTACCGGAAGTAGCAAAAAGGTAATAACAGCAACTCCGAGACAGATTGAGAGTCTATTGCGCCTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATGGGTTGAAAAGCATGATGTTGTGGAGGCATTTCGGCTTTTGGAAGTTGCAATGCAGCAGTCTGCAATGGATATCAGAACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGTCAAGCGAAAGGATGAGACGAGAAAGTTTGATTCAAGATACTCGCAACTTAATCATGGAGAAGATGCAAATTGGGGGACGTTCCATGCGGTTATTGGAGATATTGGAAGAATTGAAGAATCAGAGCCCTGGCAGCGAAATTCATCTTAATGATCTAAGGAGTGCAGTTGCTACTCTCGCCAGCGAAGGATTTCTTTCCATGCAGGGTGACAGTGTAAAAAGGACATGA | 2520 | 0.4377 | MASDSTPMDINNGPSSPDNSLSSPIANTYSSPGRRRRRQSTTPSGTPQPNRSRFASSDATPTPSRHRARGAGGGVPSGRRVPATPTSTSDDIPMSSEGGDGYDMDDAGPTYVWGTNISVEDVNDAIQRFLKHFRERSSSQGDSDDLDLDVDGKYEKLIKQVIELEGESIDVDARDVFDHDPDLYNKMVRYPLEVLAIFDMVLMNMVTRVKPMFEKHVQTRIFNLKSSTSMRNLNPSDIERMVSMKGMIIRSSSIIPEIREAIFRCLVCGFCSDPVPVERGRIAEPTVCLREECQSRNSMTLVHNRCKFTDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTSKSRMLVEDAMEVDNGQGRNTEEVIFNEEKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHFKDYENMEQDVLDLSTLTDYVSYARKHIHPQLSDEAADELITGYVKIRGRGKFTGSSKKVITATPRQIESLLRLSEALARIRFSEWVEKHDVVEAFRLLEVAMQQSAMDIRTGTIDMDLITTGVSSSERMRRESLIQDTRNLIMEKMQIGGRSMRLLEILEELKNQSPGSEIHLNDLRSAVATLASEGFLSMQGDSVKRT | 839 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g02741 | 839 | Gene3D | - | 410 | 751 | IPR027417 | - | |
| Trre7g02741 | 839 | Pfam | MCM N-terminal domain | 125 | 223 | IPR027925 | - | |
| Trre7g02741 | 839 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 124 | 793 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre7g02741 | 839 | SMART | mcm | 226 | 743 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre7g02741 | 839 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 440 | 742 | IPR027417 | - | |
| Trre7g02741 | 839 | CDD | MCM4 | 432 | 741 | - | - | |
| Trre7g02741 | 839 | Gene3D | - | 752 | 835 | IPR036388 | - | |
| Trre7g02741 | 839 | ProSiteProfiles | MCM family domain profile. | 429 | 635 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre7g02741 | 839 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
| Trre7g02741 | 839 | FunFam | DNA helicase | 257 | 309 | - | - | |
| Trre7g02741 | 839 | Gene3D | - | 116 | 224 | - | - | |
| Trre7g02741 | 839 | SUPERFAMILY | Nucleic acid-binding proteins | 151 | 380 | IPR012340 | - | |
| Trre7g02741 | 839 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
| Trre7g02741 | 839 | Gene3D | - | 257 | 309 | - | - | |
| Trre7g02741 | 839 | Pfam | MCM P-loop domain | 417 | 639 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre7g02741 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 303 | 315 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Trre7g02741 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 743 | 752 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Trre7g02741 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 252 | 265 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Trre7g02741 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 591 | 608 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Trre7g02741 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 445 | 456 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Trre7g02741 | 839 | Pfam | MCM OB domain | 230 | 359 | IPR033762 | - | |
| Trre7g02741 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 470 | 485 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre7g02741 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 582 | 594 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre7g02741 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 609 | 617 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre7g02741 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 530 | 544 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre7g02741 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 558 | 571 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre7g02741 | 839 | FunFam | DNA helicase | 410 | 748 | - | - | |
| Trre7g02741 | 839 | ProSitePatterns | MCM family signature. | 538 | 546 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Trre7g02741 | 839 | Gene3D | - | 230 | 369 | IPR012340 | - | |
| Trre7g02741 | 839 | Pfam | MCM AAA-lid domain | 655 | 741 | IPR041562 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g02741 | Trre-Chr7 | 23775330 | 23779936 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g02741 | 1 | 838 | Core DNA Replication Machinery Family | AT2G16440 | 73.592 | 0.0 | 1249 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g02741 | K02212 | - | gmx:100805788 | 1402.5 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre7g02741 | 7 | 23775330 | 23779936 | Trre7g02741 | 7 | 23775330 | 23779936 | ECH |