Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02713 ATGGAAGTTGTTGTAGCAAAAGCGTTGAAACCAAGCTTACGAACAGAATCTATTTTTCCACAAACAATTTGTGAAGAGATTTTGTGTTTGAACGCTAACAACGTTGTTGTCGGTGAAGATTTTTCCGTTGATGACTTACTTGACTTTTCCAACGGCGAGTTTCAACACGGTTCTGTCGGAAAAGAAATTGATGATTACGAGGAAGAAGAAGAAGAAGAACATGAAAAAAACAGCACCACCTCGGTTTGTTCACAGGACCGAACAGAAGACGACGGTAATTCAATTTCAACAACTTTTTCCGGTGCCGGCGACGGCGAGTCTGACTCCATTTTTGCCGGCGGATTATCAGTTCCGGCTGATGATGTTGCGGATTTGGAATGGGTATCTCAGTTTGTTGATGATTCTCTGCCGGAACTATCTCTTTTGTATCCGGTTCAGGCCCGAGTCGAACCGGAAGCTAGACCGGTTCCAACAAAAGCTTCTTCGCAACTCTGTTTAATCCGTAGAAAGCCCAGAACCAACAAGCCTAGAAGGCCCAATTGTAACGTGTGGGCCTTCAACCCAGTACTCTCCTTCTCCTCTGCAAAGAAGCAGAGGAAAAAGCCCGAGGCTCCAACCGGTGGAGCCCAGTTTCAAAGAAGGTGCAGCCACTGCCAGGTGCAGAAAACGCCACAGTGGAGAACCGGTCCGCTTGGACCGAAAACACTTTGTAACGCTTGTGGTGTTCGGTTTAAATCCGGTCGGCTTTTTCCGGAGTATAGACCGGCTTCAAGCCCAACTTTTTCCGGTGATATTCACTCGAACAGCCACCGTAAGGTTTTGGAGATGAGGCGGAGGAAGGAGACCGATGAACCAGAGACCGGTCTGGACCGGAATTAA 879 0.4767 MEVVVAKALKPSLRTESIFPQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDDYEEEEEEEHEKNSTTSVCSQDRTEDDGNSISTTFSGAGDGESDSIFAGGLSVPADDVADLEWVSQFVDDSLPELSLLYPVQARVEPEARPVPTKASSQLCLIRRKPRTNKPRRPNCNVWAFNPVLSFSSAKKQRKKPEAPTGGAQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPASSPTFSGDIHSNSHRKVLEMRRRKETDEPETGLDRN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02713 292 PANTHER GATA TRANSCRIPTION FACTOR 30 283 - -
Trre7g02713 292 CDD ZnF_GATA 214 271 IPR000679 GO:0006355|GO:0043565
Trre7g02713 292 ProSiteProfiles GATA-type zinc finger domain profile. 213 245 IPR000679 GO:0006355|GO:0043565
Trre7g02713 292 FunFam GATA transcription factor 206 289 - -
Trre7g02713 292 ProSitePatterns GATA-type zinc finger domain. 215 240 IPR000679 GO:0006355|GO:0043565
Trre7g02713 292 Pfam GATA zinc finger 215 248 IPR000679 GO:0006355|GO:0043565
Trre7g02713 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 272 - -
Trre7g02713 292 MobiDBLite consensus disorder prediction 58 103 - -
Trre7g02713 292 MobiDBLite consensus disorder prediction 256 292 - -
Trre7g02713 292 Gene3D - 208 260 IPR013088 GO:0006355|GO:0008270
Trre7g02713 292 MobiDBLite consensus disorder prediction 268 292 - -
Trre7g02713 292 SMART GATA_3 209 259 IPR000679 GO:0006355|GO:0043565
Trre7g02713 292 PIRSF Txn_fac_GATA_plant 12 291 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre7g02713 292 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02713 Trre-Chr7 23295126 23296113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02713 40 283 C2C2-Gata Transcription Factor Family AT4G36240 46.124 6.50e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre7g02713 GATA 3.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02713 - - gmx:100776188 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02713 7 23295126 23296113 Trre7g02713 7 23295126 23296113 ECH
Trre5g05906 5 58648303 58649299 Trre7g02713 7 23295126 23296113 ECH