Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02605 ATGGATTTATCATCCATTCCCGAACTAAAACGATATGATAGTTTGCTTTCAATCTCTGATCGAAAAACTAATAGGGAGTTTAAACTCAAGATTATGAAAAAATGGTATGTCAAGGATGCCTTAAAAAATGGGGGAATTGTTTCTGTGGAGATGATAATGGCTGATCAGACTGGTCACAAAATACAGGCCTCCATTCCCAAAACTTTATGTTCTATGTTTGACAAAAAAATTATTGAGGGTAAAATATATATAATGTCGAATTTCACTGTTAAGTCCAACATTGGTGACCTTTTAGGGAGTTATCATAGGAATTTATTGGTGTTCAATGCTAAAACCGAGGTTAAGAGAACTTGGGGATATGGCTTTCCTTCAAATGGAGTCACTTTGATTGGTTCTACTGATGTTCTATCTTTGAAGGAGAAGTTTAAATATTTGATTGATGTCATTGGGGTGGTTACTTATGTTAGGCACGACAAGAACATATTCTCTGACGGTACTACGACCAACACCGTCACTTTGAAGCTTACTGATAATAGGGACTCATATGAGGTTGAGTTATCTGGAGGTTATGTCAACCTTTTTCGTGAAATGATGAAAGACATTGGATTGGGGCTGCCCGTTGTTGTTCTGCAATGGGTGAAAGTAGCCACTAATCAAGCATCGCAATTTAGGAAAGGTTTGGTTCCTAAACTTAACTCAAAGCGAAAAACCCTTGGTTTTCCTCGGACTGACAAACCTATTGGGTTCAATTTCACAACACATTATCATTGCAAGAGCATTTCACAACTTAAGGAGGATCCCACACTTGGAATCTATTTGGTTAACGCTCGATTAATGGATGTTGCTGCACTTGACACTTGGTGGTATCCGGTTTGCGGTTGCGACCTAATCATTGAGGATTACCTTGGTGCTTTTTTCTGCGGGAAGTGCTATGCTACTGATTTTCATCCCATGCTAAAGTTTAGAGTTAAAATAGTTATTGACGATGAGAGTGGTTCAACATTTGTTGAGTCTTTTGATCATGTTATGCTTCCCATTGCTACCATCGATCCAAGAAACCCGCAAATTGCCGCGAATTATTTCCCTCGTGCATTTGAGTCAGTTTATGGCAAAAGTATTATGTTTATAATTGAGAAAAAGAGGCATGATGCTCAATATTGTGATGGAATGTTTGAGGTACTTTGTGTGTCTGATGATCCAGCCATTATCAAATACTATGTTGACAAAGGAGTTTGCTCTACTCCATCTAAGGAGGTTGATAGAACTTTTGAGAAGGAAAGTAGTTTGATGAGGCCAATTGTTTATGAGTCCCCTGTTACCACTACTAAGGAGCTGCTGGCTGAGTATTTGCATTCAAACTCTGCAATTACCCAATTGTGGGAAGTTGGGGAGAGTTCTAATGCTGCCGCATCTAGCGCAAATGAAGAAAATTCAGACTTAAGATCAGTTCGTCCTCGCCTTAGTTGA 1467 0.3892 MDLSSIPELKRYDSLLSISDRKTNREFKLKIMKKWYVKDALKNGGIVSVEMIMADQTGHKIQASIPKTLCSMFDKKIIEGKIYIMSNFTVKSNIGDLLGSYHRNLLVFNAKTEVKRTWGYGFPSNGVTLIGSTDVLSLKEKFKYLIDVIGVVTYVRHDKNIFSDGTTTNTVTLKLTDNRDSYEVELSGGYVNLFREMMKDIGLGLPVVVLQWVKVATNQASQFRKGLVPKLNSKRKTLGFPRTDKPIGFNFTTHYHCKSISQLKEDPTLGIYLVNARLMDVAALDTWWYPVCGCDLIIEDYLGAFFCGKCYATDFHPMLKFRVKIVIDDESGSTFVESFDHVMLPIATIDPRNPQIAANYFPRAFESVYGKSIMFIIEKKRHDAQYCDGMFEVLCVSDDPAIIKYYVDKGVCSTPSKEVDRTFEKESSLMRPIVYESPVTTTKELLAEYLHSNSAITQLWEVGESSNAAASSANEENSDLRSVRPRLS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02605 488 Gene3D - 251 390 IPR012340 -
Trre7g02605 488 MobiDBLite consensus disorder prediction 467 488 - -
Trre7g02605 488 SUPERFAMILY Nucleic acid-binding proteins 18 97 IPR012340 -
Trre7g02605 488 CDD RPA1_DBD_A_like 30 114 - -
Trre7g02605 488 SUPERFAMILY Nucleic acid-binding proteins 255 381 IPR012340 -
Trre7g02605 488 Pfam Domain of unknown function DUF223 50 116 IPR003871 -
Trre7g02605 488 Gene3D - 11 116 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02605 Trre-Chr7 21555140 21557652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02605 10 340 Core DNA Replication Machinery Family AT5G08020 21.180 1.98e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02605 - - tpra:123922259 447.588