Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02602 ATGGGTCATGTATTTGATATGCTTGGTGTTATTTATCCTAGAAGAAAAACTTGGAGGATCAAGGTTCGTGTTATTAGTTTGTGGACTGTGAAATCTGTTTTTAGAGCTAATCAAATCAATTCACTAGAAATGGTTCTCATCGATGAGAAGGGGGACAAAATTCAAGCTTCTATTCGTCGTCAGCTTATTTATATGTTTTTGTCCAAAATTGTGGAAGGAAATGTCTATAAGATGTCTCATTTTATTGTTGTTCCAACTGATGATCGTTATCGAACAAATATTTATCCCTATAAACTTATTTTTCGTCTGAAAACTAAGGTTCGATATTGTCCAAATGATGCTATTGATCGATATGGTTTTAATGCTACCAATATTACTCAAATATATTCATTGGGAGCTTATCATCGTTACCTAATTGATGTCATTGGTGTTGTGACCGGAATAACTAATGAGAGGGAGTATATTCGAAATGGAAAAATGACAAGGATGATTATCATTGAGTTAAGCGATCATAGTGGGAAAGTTGAATGTATATTGTATGGTGAATATGTGGGTTTATTCCAAGAGTTAATTGCAGAAAATAGTGGGAAGCTTCATGTGATTGTGATTCAGTTTGGAGTTGTTAAATTATTCAGAGACAAGGTGTCTATTCAGAATGTTGATTCTGCTACAAGGATTTATTTTGATCCCCCTGTTAAGGATGTGGTTGATTTCAAGAATAGTCTTTATCTTCAAGGAGTTAATTGTGGACTAAATATTCCTTTGATTGATCCGCCAAGTAGGATATTACTTGAGGATGAGTTTTTGGTTAAATATCCAAAGAAAACTATTTCTCAATTAGTTGCTGGTATTGATGATGGTATATACGTTGTTAGTGGTGTTGTTACTAGCATTTTGGGAGGTGATGAATGGTGGTATCCTTCATGTACCTGCCATAAAATTGTGTCTCGTGAGCCTCAAGGTTATTATTGTGAAGCTTGTGTGAAATATTTTTTACACATGGTTCCTAGGTACAAGGTTAATGTAATTGTTGATGATGGTACTGGTCAGGCTGTTTTCATTTTGTTCGATCTTGATATGTGTAATCTTATTGATAAAAAGTGTTCTGAGTTGTTTCTCGACGATAAGGTTGATGATGATGGATGTTATCCCGTTGAATTTGATTTATTGGTTGGACTGAAATTGTTATTTCAAGTTGAAAAGGGTTTAACATCTAATGTTCAAATTGATGGATCTTTTAATGTTAAACGAGTTTGTGATCATGAAATTATCATTGCAAAATTTGATGATGGAAGGTTTGATAATCTTAGTGGTAGTCGAATCGTTCCCAGAATCCCTGATGAAGCACGCTTTGAAACAGTTGTTCATCCAAAAGAGAAGTTGATCTCTGTGCCATGGTCATTTGTTGAGGTCTGGAAAAGAGCCAACCTTCCTCATTGTTCTGTCAAGATATCATCTGGTGGAAAATCTATTAATGCTACATTCTGTGTATCTGATGAGGCTTTTATGTTCTATGCGGATAAGGTTGCTGAATTCTTTGGCTTTGCTGAACCAACTAGGGTGATGATGACATACATCATCAGTGAAAACACATTTTTCTTGGATGTTGTTGGTGATGCTGTTACTGAGGAATCATCCAATGAAAATGAAATTGTTTCCCTCACCTCAAGTGGTGATGAATCTGAATATGGCTATGATGAATCTGATGATCAGCTTAATGAATCTCAGAATCAGCAGATGATTGTGGTATGA 1752 0.351 MGHVFDMLGVIYPRRKTWRIKVRVISLWTVKSVFRANQINSLEMVLIDEKGDKIQASIRRQLIYMFLSKIVEGNVYKMSHFIVVPTDDRYRTNIYPYKLIFRLKTKVRYCPNDAIDRYGFNATNITQIYSLGAYHRYLIDVIGVVTGITNEREYIRNGKMTRMIIIELSDHSGKVECILYGEYVGLFQELIAENSGKLHVIVIQFGVVKLFRDKVSIQNVDSATRIYFDPPVKDVVDFKNSLYLQGVNCGLNIPLIDPPSRILLEDEFLVKYPKKTISQLVAGIDDGIYVVSGVVTSILGGDEWWYPSCTCHKIVSREPQGYYCEACVKYFLHMVPRYKVNVIVDDGTGQAVFILFDLDMCNLIDKKCSELFLDDKVDDDGCYPVEFDLLVGLKLLFQVEKGLTSNVQIDGSFNVKRVCDHEIIIAKFDDGRFDNLSGSRIVPRIPDEARFETVVHPKEKLISVPWSFVEVWKRANLPHCSVKISSGGKSINATFCVSDEAFMFYADKVAEFFGFAEPTRVMMTYIISENTFFLDVVGDAVTEESSNENEIVSLTSSGDESEYGYDESDDQLNESQNQQMIVV 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02602 583 Gene3D - 271 422 IPR012340 -
Trre7g02602 583 SUPERFAMILY Nucleic acid-binding proteins 120 249 IPR012340 -
Trre7g02602 583 Gene3D - 7 110 IPR012340 -
Trre7g02602 583 Gene3D - 114 250 IPR012340 -
Trre7g02602 583 MobiDBLite consensus disorder prediction 556 577 - -
Trre7g02602 583 CDD RPA1_DBD_A_like 19 107 - -
Trre7g02602 583 PANTHER OS03G0429900 PROTEIN 12 241 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre7g02602 583 CDD RPA1_DBD_B_like 140 243 - -
Trre7g02602 583 Pfam Domain of unknown function DUF223 43 110 IPR003871 -
Trre7g02602 583 Pfam Replication factor-A C terminal domain 292 372 IPR013955 -
Trre7g02602 583 SUPERFAMILY Nucleic acid-binding proteins 11 113 IPR012340 -
Trre7g02602 583 SUPERFAMILY Nucleic acid-binding proteins 273 399 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02602 Trre-Chr7 21537059 21542005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02602 11 381 Core DNA Replication Machinery Family AT5G08020 25.505 7.58e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02602 - - tpra:123893724 429.483