Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02598 ATGCACATCTTCGTCAAAACTTTGACCGGAAAGACTATCACTCTCGAGGTTGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTGCTGATTATAACATACAAAAGGAATCAACCCTTCACTTGGTCCTAAGGCGCAGAGGAGGAACCATGATTAAAGTGAAGACTTTAACTAGAAAAGAGATTGAAATTGACATTGAGCCAACTGATACAATTGATCGTATAGAGGAACGTGTTGAAGAAAAAGAGCGAATTCCACCTGTGCAGCAGAGGTTCTCTCTCTCTCTCTTGCTAATTGGGCTTGATTAA 390 0.4462 MHIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRRRGGTMIKVKTLTRKEIEIDIEPTDTIDRIEERVEEKERIPPVQQRFSLSLLLIGLD 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02598 129 Gene3D - 77 126 - -
Trre7g02598 129 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trre7g02598 129 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trre7g02598 129 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trre7g02598 129 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Trre7g02598 129 Pfam Ubiquitin family 79 121 IPR000626 GO:0005515
Trre7g02598 129 SMART ubq_7 1 72 IPR000626 GO:0005515
Trre7g02598 129 SMART ubq_7 77 128 IPR000626 GO:0005515
Trre7g02598 129 Gene3D - 1 76 - -
Trre7g02598 129 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Trre7g02598 129 PANTHER UBIQUITIN 79 119 - -
Trre7g02598 129 CDD Ubl_ubiquitin 1 76 - -
Trre7g02598 129 FunFam Polyubiquitin 3 1 76 - -
Trre7g02598 129 SUPERFAMILY Ubiquitin-like 77 120 IPR029071 -
Trre7g02598 129 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Trre7g02598 129 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trre7g02598 129 ProSiteProfiles Ubiquitin domain profile. 77 119 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02598 Trre-Chr7 21433749 21447583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02598 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.368 5.28e-49 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02598 K12158 - dct:110096879 203.371