Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02594 ATGGGTTCGAAACTAACAGGGAAGGTGAAATGGTTCAATGATCAGAAGGGGTTTGGTTTCATCACCCCTGATGATGGTTCTGATGAGCTTTTTGTTCATCAATCGCAGATCCAGACTGACGGTTTCCGTAGTCTTGCTGAAGGAGAGTCTGTTGAGTATCAGGTTGAATCTGATAACGATGGACGATCTAAGGCTGTTAATGTTACTGGACCTGATGGTGCTAATGTTCAAGGAACCAGACGCGGCGGTGGTGGCGGCGGCGGTGGTTATGAGCGTGGTGGTGGTGGTTATGGCGGTGGAGGCTATGGTGGTGGAGGTGGTGGCTATGGAGGTGGAGGCGGTTATGGAGGTGGAAGAGGTGGAGGCGGAGGCGGCTACAGTGGTGGCGGAGGAGGCTATGGTGGTGGTGGTGGTGGACGTGGTGGAGGACGTGGTGGTGGCGGTGGTGGCTGCTATAACTGTGGTGAATCTGGACACATGGCTAGGGATTGCAGCAGCGGTGGAAGCGGTGGAGGAGGTGGTGGTAGGTACGGTGGAAGCGGTGGAGGAGGTGGCGGCGGTGGAAGCTGCTACAGCTGTGGAGAGTCTGGTCACTTTGCCAGAGATTGCCCAACCAGTGCTCGTTAG 627 0.5582 MGSKLTGKVKWFNDQKGFGFITPDDGSDELFVHQSQIQTDGFRSLAEGESVEYQVESDNDGRSKAVNVTGPDGANVQGTRRGGGGGGGGYERGGGGYGGGGYGGGGGGYGGGGGYGGGRGGGGGGYSGGGGGYGGGGGGRGGGRGGGGGGCYNCGESGHMARDCSSGGSGGGGGGRYGGSGGGGGGGGSCYSCGESGHFARDCPTSAR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02594 208 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Trre7g02594 208 CDD CSP_CDS 6 70 IPR002059 GO:0003676
Trre7g02594 208 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 205 - -
Trre7g02594 208 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Trre7g02594 208 Gene3D - 185 208 - -
Trre7g02594 208 Gene3D - 140 173 - -
Trre7g02594 208 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Trre7g02594 208 ProSiteProfiles Zinc finger CCHC-type profile. 190 204 IPR001878 GO:0003676|GO:0008270
Trre7g02594 208 Gene3D - 2 82 IPR012340 -
Trre7g02594 208 SUPERFAMILY Retrovirus zinc finger-like domains 143 206 IPR036875 GO:0003676|GO:0008270
Trre7g02594 208 SMART csp_8 6 71 IPR011129 GO:0003676
Trre7g02594 208 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Trre7g02594 208 Pfam Zinc knuckle 189 204 IPR001878 GO:0003676|GO:0008270
Trre7g02594 208 Pfam Zinc knuckle 150 165 IPR001878 GO:0003676|GO:0008270
Trre7g02594 208 MobiDBLite consensus disorder prediction 163 186 - -
Trre7g02594 208 MobiDBLite consensus disorder prediction 56 87 - -
Trre7g02594 208 ProSiteProfiles Zinc finger CCHC-type profile. 151 164 IPR001878 GO:0003676|GO:0008270
Trre7g02594 208 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Trre7g02594 208 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Trre7g02594 208 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Trre7g02594 208 MobiDBLite consensus disorder prediction 60 74 - -
Trre7g02594 208 SMART c2hcfinal6 150 166 IPR001878 GO:0003676|GO:0008270
Trre7g02594 208 SMART c2hcfinal6 189 205 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02594 Trre-Chr7 21376681 21377307 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Trre7g02594 CSD 8.4e-28 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02594 - - qlo:115969597 156.762