Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02566 ATGGCATCTTCTTTCGTCAAGCTTGATGATTCCCCAATGTTCCACAAACAGTTATTTTCTATTGAAGAAACATCAGACGAGTTGAAGGATCGGTGCCAGAATCTATTTAAAGGGTGTAAGAAGTTTATGACAGCTTTAGGGGAAGGATATAATGGAGAACTTGCCTTTGCTGATTCATTAGAAGCATTTGGAGGTGGCCACGACGATCCTGTCAGTGTATCAATTGGAGGACCCGTCATATCTAAGTTTATCACTGCACTACGTGAATTAGCTACTTTTAAAGAGCTTCTTCGCTCACAGGTAGAGCATGTATTGATAGACCGGCTGACAGAGTTTATAAATGTTGATTTGCAAAATGCAAAGGAATCTCGCCGTCGTTTCGACAAATCTGTGCATGCTTATGATCAGTCACGTGAAAAGTTTGTTTCTTTGAAGAAGAATACACCTGAAGACATTGTTGCTGAATTAGAAGAGGGTCTACAAAATTCAAAGTCATCATTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCATAAGTGCAATAATGGATGCTCATCTGAGATACTTTAAACTGGGTTACGACTTGCTGAGCCAAATGGAGCCTTACATTCACCAGGTGCTAACATATGCTCAACAATCTAAAGAACTGGCTAATATTGAGCAAGACAAGCTTGCAAAACGGATCCAGGAATACAGAACACAGACAGAGCTTGATAATACTGAACCCATGCTAGGTGCTGATGGCACCCATCCTGTAGGCTTGCCTTCTTACAAAAGCTTTGAGGCAGGAGTGCAGTCTGCAACCAAAGGCGAGATTCAAACAGTTAAACAAGGCTATCTGTTAAAACGATCATCAAGGACGCGAGGAGATTGGAAAAGGAGGTTTTTTGTACTTGATAACCATGGGAGTTTATATTATTATAGATCAAAAGGACCCAAGGCCATGGGATTTCAGTCACATAATTATAGTCGTTTTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCATAATAGGGCAACATCACTAAACGAGGATATTTTGGGTTGTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTTCGTATTATTTCTCCCTCAAAAACATATACATTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTACACAAAATAACTGGAGCTATCACTTCACTTTTTAATTTTCAGTTTCTACAGCCTCATTATGGTAAATTGCAATTAGAAGATAAAAACTCAGCAACTGGTTCTTCTTTGACAAGTCAACAAGAGGGTAGTAATAAATCTTTGATGGATGATGTATTTCTCAAAGAAGCGGGCAGTGTCTCTCAAATTTTAAGGAGAATTCCTGGGAATGATAAGTGTGCTGAGTGTAGTGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGTATACTTCTGTGTATCGAATGCTCTGGAGTGCATCGCAATTTTGGAGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTGAGGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAACTTAGGTAATACTTATTGTAATTCTATTTGGGAGGGCTTGCTTCAACTTGGCGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCATGCTCCACAGATCCCTCCCAACATAAAGAAAAGTACATCCAGGCAAAGTATGTAGAGAAATCACTAGTCATCCAGGAAGAGGATACACCTGAAAATCCTTCAGTTTCCGCAAAAATCTGGCAAGCAGTTCAAGATATAAATGTACGAGAAGTGTATCGCCTTATTGTAACATCAACTTCAAATCCAATAAACACAAAATATGATGATGTGGTTCCCCATGCCGATACTGAAGGAAATCAGCATGATCCTGAAGCCTGTCTGAGGATTAAAGAGACTAATGAAAGAGAGAGTTGTTTTCGTGGTTGGTCTATATTACATCTGGCATGTCATTCTGATAGTACACTAATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATATAAACATGTGTGACTATCATGGAAGGACTCCCTTGCACCATTGCATCTCTAGCGGGAAAAATCCATTGGCAAAGTTCTTACTAAGAAGGGGCGCAAAACCGTCAATTAAAGATGCTGCTGGACATACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAACAGTTGTTTATCATGCTTGTTGAACACCAGTAA 2301 0.3985 MASSFVKLDDSPMFHKQLFSIEETSDELKDRCQNLFKGCKKFMTALGEGYNGELAFADSLEAFGGGHDDPVSVSIGGPVISKFITALRELATFKELLRSQVEHVLIDRLTEFINVDLQNAKESRRRFDKSVHAYDQSREKFVSLKKNTPEDIVAELEEGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQTELDNTEPMLGADGTHPVGLPSYKSFEAGVQSATKGEIQTVKQGYLLKRSSRTRGDWKRRFFVLDNHGSLYYYRSKGPKAMGFQSHNYSRFSEQNSGMFGRFRSRHNRATSLNEDILGCCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVHKITGAITSLFNFQFLQPHYGKLQLEDKNSATGSSLTSQQEGSNKSLMDDVFLKEAGSVSQILRRIPGNDKCAECSAPEPDWASLNLGILLCIECSGVHRNFGVHISKVRSITLDVRVWEPTILELFNNLGNTYCNSIWEGLLQLGDERVGESNVPLKPCSTDPSQHKEKYIQAKYVEKSLVIQEEDTPENPSVSAKIWQAVQDINVREVYRLIVTSTSNPINTKYDDVVPHADTEGNQHDPEACLRIKETNERESCFRGWSILHLACHSDSTLMVELLLQFGADINMCDYHGRTPLHHCISSGKNPLAKFLLRRGAKPSIKDAAGHTALERAMEMGAITDEQLFIMLVEHQ 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02566 766 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Trre7g02566 766 Pfam PH domain 290 421 IPR001849 -
Trre7g02566 766 SMART ANK_2a 706 735 IPR002110 GO:0005515
Trre7g02566 766 SMART ANK_2a 673 702 IPR002110 GO:0005515
Trre7g02566 766 CDD PH_ACAP 291 426 - -
Trre7g02566 766 CDD ArfGap 475 590 - -
Trre7g02566 766 PRINTS HIV Rev interacting protein signature 525 546 IPR001164 GO:0005096
Trre7g02566 766 PRINTS HIV Rev interacting protein signature 502 519 IPR001164 GO:0005096
Trre7g02566 766 PRINTS HIV Rev interacting protein signature 483 502 IPR001164 GO:0005096
Trre7g02566 766 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Trre7g02566 766 PANTHER CENTAURIN/ARF 3 763 IPR045258 GO:0005096
Trre7g02566 766 Coils Coil 229 249 - -
Trre7g02566 766 Gene3D - 281 429 IPR011993 -
Trre7g02566 766 ProSiteProfiles ARF GTPase-activating proteins domain profile. 471 603 IPR001164 GO:0005096
Trre7g02566 766 ProSiteProfiles Ankyrin repeat region circular profile. 673 704 - -
Trre7g02566 766 Gene3D Arf GTPase activating protein 454 603 IPR038508 -
Trre7g02566 766 ProSiteProfiles Ankyrin repeat profile. 673 705 IPR002110 GO:0005515
Trre7g02566 766 SUPERFAMILY Ankyrin repeat 670 758 IPR036770 -
Trre7g02566 766 SUPERFAMILY PH domain-like 288 429 - -
Trre7g02566 766 Pfam Ankyrin repeats (3 copies) 666 737 IPR002110 GO:0005515
Trre7g02566 766 Gene3D - 606 758 IPR036770 -
Trre7g02566 766 CDD BAR_SFC_plant 16 217 IPR035670 -
Trre7g02566 766 SUPERFAMILY ArfGap/RecO-like zinc finger 474 596 IPR037278 -
Trre7g02566 766 ProSiteProfiles PH domain profile. 288 422 IPR001849 -
Trre7g02566 766 SMART arf_gap_3 471 603 IPR001164 GO:0005096
Trre7g02566 766 Pfam Putative GTPase activating protein for Arf 474 596 IPR001164 GO:0005096
Trre7g02566 766 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Trre7g02566 766 ProSiteProfiles Ankyrin repeat profile. 706 738 IPR002110 GO:0005515
Trre7g02566 766 SMART PH_update 289 424 IPR001849 -
Trre7g02566 766 ProSiteProfiles Ankyrin repeat region circular profile. 706 737 - -
Trre7g02566 766 SUPERFAMILY BAR/IMD domain-like 8 311 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02566 Trre-Chr7 21104879 21120251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02566 477 590 C2H2 Transcription Factor Family AT3G07940 41.739 1.46e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02566 K12489 - gmx:100796740 1281.93