Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02560 ATGCAAGAGCATCATCATCATCATCAACAGCAGCAGCAAAATCCTTCTGCACTGTTGCCACAACTCACCGCCAATCATCAATCCTCAACTACCGTCACTTCTATTAGGTCACCATCTTCAACCTCCGCCGCCGCTCATTCCCACCGTCAATCCTTACTTCCTGCGCCGGTCGCGGTTGTTCTCCCGTCCGGGGAGCCGGTTTCGACGGCGCCGCTGAATTTTCAGTTGGCGAGAGTTCGACTGTCGGATATTGGTCCTTATGACGGTGCACCGGCGGGGACTTATGTTAGGGCAATGGAAACACTGTGTTCGTCTCTGTTGAAGTACAATGCGGCTTTGATTGAATTAGGGAGTGAAGATACTGCTCTTATGCGATGTGGATTGGAAGGTGCTAGATTGTTCTTTAGGAGTAGAGCACATCTCGGTGTTGGAAAGGGAAGCCGTGGCGTTTACATGTATAGGGCAGGAAGAGCTTTGGAGGATTGGGATTCGTCTCCTCCTTGTATGGCGGATATTTTTAGGTGCATGGGGAAGGCTTCTCGTGTTGCTTTGTCTGCCATTGCAAGGCATCTGCGCCTCAGAAGCGATGTTTTCAACCAACTGCTTGATGATGCTCCATTGCCTGCTAATGAGGTGTCTTCTTCTGTTCTTGTTGGGACCTACTCGCACGCTTCTTTACAAAATGGAAAAGGTGCCATCGGAGGCGGTAAGCCTACCGTCAATGGCGAAGTTGAGAAGGGGTTGTTGACCTTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGACCCTAATGGCCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCTGGAGATCTTTTACTGATAACAGGCCGGGCGCTTAGCCATGCTACTGCAGGCCTACATCCAGCCGCATCATATAGAGCTTCTCCAGATTGTTTTTTGAGTCCTAATAGTGGAGGAAGGACTTCACTTGCATATAGACTCATGCCACAGGGCAATGCTATATTAGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTACTCAAAGCTATGTTCCAATATCTGTAAGCCAATTTATGGACGACCTTGCTGCTGAAGAACTGATAGGCAGCAGATGTGATAATAATGACGTTGCTCAAAGCAATGCGAACAAGGACCCGTCATTAAGAAGTGTTCTATCAGATCCCTTGTCTGGCTCATTTCTGGAAGATGCAATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCACGCTGAGGAGAGTCATTGAAACATCAAGATGCACCCTCTGCAATGTTGATATCGAAACCGGCTCTCTGACCCCTAATCTCGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGATCGAAGGTTATTTCGTAATGCTGCTCTTCGAAAGCGGAGGAAAGAAATGGGTGAACCAATGGATCCAATCAGAAGAGTGAACAGGGAAAATGGAGATTTTACTTCTGCTGATGGACTCCAGCGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATCAAGGGTAACAGGAGAACACCCGAAAAATTTGTTGGGAAAGAAGCTGTCATTACGTCTCAGTGCCTCAATGGCTGGTATTTGCTCAAGATTATTGGATCTGGAGAGAATGTCCGCCTGCAGTATCGTTCTCTCAGGAAGCTCTTAAACACACCAACAATGGAGGACCAGTGTCAGGTGCAGCCAGTTCAAAATAGCAGCTCTTAG 1731 0.4766 MQEHHHHHQQQQQNPSALLPQLTANHQSSTTVTSIRSPSSTSAAAHSHRQSLLPAPVAVVLPSGEPVSTAPLNFQLARVRLSDIGPYDGAPAGTYVRAMETLCSSLLKYNAALIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRVALSAIARHLRLRSDVFNQLLDDAPLPANEVSSSVLVGTYSHASLQNGKGAIGGGKPTVNGEVEKGLLTLISSDTPGLQVCDPNGRWYLADSGSGPGDLLLITGRALSHATAGLHPAASYRASPDCFLSPNSGGRTSLAYRLMPQGNAILDCSPIAAAGHVITQSYVPISVSQFMDDLAAEELIGSRCDNNDVAQSNANKDPSLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSRCTLCNVDIETGSLTPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGEPMDPIRRVNRENGDFTSADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKLLNTPTMEDQCQVQPVQNSSS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02560 576 Gene3D - 149 364 IPR027443 -
Trre7g02560 576 MobiDBLite consensus disorder prediction 25 48 - -
Trre7g02560 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 453 IPR013083 -
Trre7g02560 576 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 75 567 - -
Trre7g02560 576 SUPERFAMILY RING/U-box 385 451 - -
Trre7g02560 576 SUPERFAMILY Clavaminate synthase-like 166 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02560 Trre-Chr7 21048416 21059361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02560 385 563 Plant U-box Gene Family AT5G05230 41.989 5.44e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02560 - - adu:107477161 904.049