Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02559 ATGGTAGTAGTGATCATGCAAGAGCATCATCATCATCATCAACAGCAGCAGCAAAATCCTTCTGCACTGTTGCCACAACTCACCGCCAATCATCAATCCTCAACTACCGTCACTTCTATTAGGTCACCATCTTCAACCTCCGCCGCCGCTCATTCCCACCGTCAATCCTTACTTCCTGCGCCGGTCGCGGTTGTTCTCCCGTCCGGGGAGCCGGTTTCGACGGCGCCGCTGAATTTTCAGTTGGCGAGAGTTCGACTGTCGGATATTGGTCCTTATGACGGTGCACCGGCGGGGACTTATGTTAGGGCAATGGAAACACTGTGTTCGTCTCTGTTGAAGTACAATGCGGCTTTGATTGAATTAGGGAGTGAAGATACTGCTCTTATGCGATGTGGATTGGAAGGTGCTAGATTGTTCTTTAGGAGTAGAGCACATCTCGGTGTTGGAAAGGGAAGCCGTGGCGTTTACATGTATAGGGCAGGAAGAGCTTTGGAGGATTGGGATTCGTCTCCTCCTTGTATGGCGGATATTTTTAGGTGCATGGGGAAGGCTTCTCGTGTTGCTTTGTCTGCCATTGCAAGGCATCTGCGCCTCAGAAGCGATGTTTTCAACCAACTGCTTGATGATGCTCCATTGCCTGCTAATGAGGTGTCTTCTTCTGTTCTTGTTGGGACCTACTCGCACGCTTCTTTACAAAATGGAAAAGGTGCCATCGGAGGCGGTAAGCCTACCGTCAATGGCGAAGTTGAGAAGGGGTTGTTGACCTTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGACCCTAATGGCCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCTGGAGATCTTTTACTGATAACAGGCCGGGCGCTTAGCCATGCTACTGCAGGCCTACATCCAGCCGCATCATATAGAGCTTCTCCAGATTGTTTTTTGAGTCCTAATAGTGGAGGAAGGACTTCACTTGCATATAGACTCATGCCACAGGGCAATGCTATATTAGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTACTCAAAGCTATGTTCCAATATCTGTAAGCCAATTTATGGACGACCTTGCTGCTGAAGAACTGATAGGCAGCAGATGTGATAATAATGACGTTGCTCAAAGCAATGCGAACAAGGACCCGTCATTAAGAAGTGTTCTATCAGATCCCTTGTCTGGCTCATTTCTGGAAGATGCAATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCACGCTGAGGAGAGTCATTGAAACATCAAGATGCACCCTCTGCAATGTTGATATCGAAACCGGCTCTCTGACCCCTAATCTCGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGATCGAAGGTTATTTCGTAATGCTGCTCTTCGAAAGCGGAGGAAAGAAATGGGTGAACCAATGGATCCAATCAGAAGAGTGAACAGGGAAAATGGAGATTTTACTTCTGCTGATGGACTCCAGCGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATCAAGGGTAACAGGAGAACACCCGAAAAATTTGTTGGGAAAGAAGCTGTCATTACGTCTCAGTGCCTCAATGGCTGGTATTTGCTCAAGATTATTGGATCTGGAGAGAATGTCCGCCTGCAGTATCGTTCTCTCAGGAAGCTCTTAAACACACCAACAATGGAGGACCAGTGTCAGGTGCAGCCAGTTCAAAATAGCAGCTCTTAG 1746 0.4759 MVVVIMQEHHHHHQQQQQNPSALLPQLTANHQSSTTVTSIRSPSSTSAAAHSHRQSLLPAPVAVVLPSGEPVSTAPLNFQLARVRLSDIGPYDGAPAGTYVRAMETLCSSLLKYNAALIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRVALSAIARHLRLRSDVFNQLLDDAPLPANEVSSSVLVGTYSHASLQNGKGAIGGGKPTVNGEVEKGLLTLISSDTPGLQVCDPNGRWYLADSGSGPGDLLLITGRALSHATAGLHPAASYRASPDCFLSPNSGGRTSLAYRLMPQGNAILDCSPIAAAGHVITQSYVPISVSQFMDDLAAEELIGSRCDNNDVAQSNANKDPSLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSRCTLCNVDIETGSLTPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGEPMDPIRRVNRENGDFTSADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKLLNTPTMEDQCQVQPVQNSSS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02559 581 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 80 572 - -
Trre7g02559 581 MobiDBLite consensus disorder prediction 30 53 - -
Trre7g02559 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 458 IPR013083 -
Trre7g02559 581 SUPERFAMILY Clavaminate synthase-like 171 340 - -
Trre7g02559 581 Gene3D - 154 369 IPR027443 -
Trre7g02559 581 SUPERFAMILY RING/U-box 390 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02559 Trre-Chr7 21048401 21059361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02559 390 568 Plant U-box Gene Family AT5G05230 41.989 5.76e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02559 - - adu:107477161 906.36