Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02556 ATGAGTTCTCGGACCGGTAGGGGAACTTCTGTCAGAGGTTACACCCGGCGGAGGAAGTCAGGGTTGGACCTTGACCTTAACTTACCCGCTGGTGAGAATCAGATTGCTGAGAATCCGGCTGGTGAAAATCGCGAGCAGGAGGGACCTTCGATTCAGTTGGGGCTTCGAGAAGTTGAAGTTCAAGCTAACCCACCACAGCCCATTGTATTTGAAGAAGTTCCTATGATTGATGTGGAGGAAATTGAGGATGATGATGTTATTGAATCTTCCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCTAGAAGAAATCGCGGGAGGACTATAGTTGATGTGGATTTAGAAGAGCAGACTAGGATAAGCAACAATAATCGCTACAAACGCAGAAGAGAACCTCCAAATCAAACAATTATCAATTGTGATCTTTATATAAATTTGGAAGGCAGTAGCAGCTCTACGATGGAAACTGTCAAAAAGCTACCTGAGCCTCCAAAGGAACCTGTCTTCAGCTGTCCTATATGCATGGGCCCTTTGGTTGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGGCTTGTATCAAGGCTGCTATAAGTGCTCAGGCTAAATGTCCTACCTGTAGAAAAAAGATTACCGTGAAAGAGCTTATAAGGGTGTTTCTCCCAACAACTGGTTAA 681 0.442 MSSRTGRGTSVRGYTRRRKSGLDLDLNLPAGENQIAENPAGENREQEGPSIQLGLREVEVQANPPQPIVFEEVPMIDVEEIEDDDVIESSPRAFAEAKNNSRRNRGRTIVDVDLEEQTRISNNNRYKRRREPPNQTIINCDLYINLEGSSSSTMETVKKLPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQAKCPTCRKKITVKELIRVFLPTTG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02556 226 PANTHER ELFLESS, ISOFORM B 1 225 - -
Trre7g02556 226 ProSiteProfiles Zinc finger RING-type profile. 171 209 IPR001841 -
Trre7g02556 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 224 IPR013083 -
Trre7g02556 226 MobiDBLite consensus disorder prediction 1 50 - -
Trre7g02556 226 SUPERFAMILY RING/U-box 170 215 - -
Trre7g02556 226 SMART ring_2 171 208 IPR001841 -
Trre7g02556 226 ProSitePatterns Zinc finger RING-type signature. 186 195 IPR017907 -
Trre7g02556 226 Pfam Zinc finger, C3HC4 type (RING finger) 171 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02556 Trre-Chr7 21030935 21033323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02556 16 225 C3H Transcription Factor Family AT5G48655 49.528 1.01e-49 159