Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02548 ATGTTTGTCACCCAACTTCGTAAATCAAGCTTTCAACTTTTCAGCACTATTGAGATTCACGTTCACATCACCGACGTTGTCGTCTTGATGTATGAGAATGAGGATGAGACTGTCGCCGGCGTGGAGAAGATGAATTCGAGAGAAATTCAGGATGTTGCAGTCAAAGTTTTAACAGTTCAGGATTTCCATGATGATCAATTGAAGGAGTTTTTGAGAGAGGTTGCAATAATGAAACGTGTTCGCCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACAACAAGCCCAAATCTATCAATAGTTACAGAGTATTTGCCGAGGTAA 324 0.4136 MFVTQLRKSSFQLFSTIEIHVHITDVVVLMYENEDETVAGVEKMNSREIQDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTTSPNLSIVTEYLPR 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02548 107 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g02548 107 Pfam Protein tyrosine and serine/threonine kinase 44 106 IPR001245 GO:0004672|GO:0006468
Trre7g02548 107 FunFam serine/threonine-protein kinase STY46-like 23 106 - -
Trre7g02548 107 Gene3D Phosphorylase Kinase; domain 1 37 105 - -
Trre7g02548 107 SUPERFAMILY Protein kinase-like (PK-like) 44 107 IPR011009 -
Trre7g02548 107 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 46 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02548 Trre-Chr7 20934605 20944736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02548 51 107 MAP Kinase Kinase Kinase AT4G24480 84.211 1.78e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre7g02548 PK_Tyr_Ser-Thr 2.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02548 - - egr:104448033 109.768