Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02542 ATGATTTTGGACAAGAAAGACATTGAGGAAACTCATTACAAGGTTCTCAATGTCAGGGAGGATGCAAATTATGAAGAGATCCGTGCTAGTTACCGAAGCGCTGCACTCAGTTTACATCCTGATAAACTATTGAAGACATCCGATACATCCAGCAGTGACCAAACAACATCAGAGAGATTTCTCAAAGTACACAAAGCATGGGAAATTCTAAGTGATTCAACCACTCGTTTATTTTATGACAAGGAGCTCAAAAGTTCAAGGCGGGAGGATTTCTTGGCTTCTGAAGTTGCAGAAGATTTAAGCTTACAGGATATGACAGCTGAAGATGCTGGTGAAACATTGGAACTTTTTTATCAATGTCGATGCGGTGATTACTTCGCTGTGGACTCGTTGGAATTGCAGAAAATGGGGTATTCCTTGTCAAGAGATGGAAACAGCATCAACATTTCTATACTCAATGTTGATACTTTACCAGGATCAGTGATTCTTCCTTGTGGTTCATGTTCGTTGAAAGCTCGTCTTACACTCAGTATGGATAACAGTTGA 546 0.4011 MILDKKDIEETHYKVLNVREDANYEEIRASYRSAALSLHPDKLLKTSDTSSSDQTTSERFLKVHKAWEILSDSTTRLFYDKELKSSRREDFLASEVAEDLSLQDMTAEDAGETLELFYQCRCGDYFAVDSLELQKMGYSLSRDGNSINISILNVDTLPGSVILPCGSCSLKARLTLSMDNS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02542 181 FunFam DNAJ heat shock N-terminal domain-containing protein-like 90 180 - -
Trre7g02542 181 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 96 177 IPR007872 -
Trre7g02542 181 PANTHER DPH3 HOMOLOG-RELATED 11 179 IPR044248 GO:0017183|GO:0046872
Trre7g02542 181 SMART dnaj_3 10 75 IPR001623 -
Trre7g02542 181 Gene3D DPH Zinc finger 90 181 IPR036671 -
Trre7g02542 181 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Trre7g02542 181 SUPERFAMILY Chaperone J-domain 10 83 IPR036869 -
Trre7g02542 181 Pfam DnaJ domain 11 80 IPR001623 -
Trre7g02542 181 Gene3D DnaJ domain 2 88 IPR036869 -
Trre7g02542 181 Pfam CSL zinc finger 99 175 IPR007872 -
Trre7g02542 181 SUPERFAMILY CSL zinc finger 97 179 IPR036671 -
Trre7g02542 181 CDD DnaJ 11 72 IPR001623 -
Trre7g02542 181 PRINTS DnaJ domain signature 13 31 IPR001623 -
Trre7g02542 181 PRINTS DnaJ domain signature 55 75 IPR001623 -
Trre7g02542 181 PRINTS DnaJ domain signature 31 46 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02542 Trre-Chr7 20895980 20896525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02542 12 80 C2H2 Transcription Factor Family AT1G74250 42.029 1.76e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02542 K17867 - gmx:100814856 259.61