Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02520 ATGGCCAAGACAAGCAATAAATCCGCCACTAAGGTTGAAGATGCTCCTGTTGTTGTTTCTCCAGCCAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGTGAATGCAGTGAGTGCAAAGAAGCAAAAGTTAGAAGAGGTTAAGCAAAAGAAGGAAGCTGAGTTGAAGAAAGTTAAGAAGGTGGAAAGTAGTTCAGAGGAAGATTCATCTGATGAGTCTGAGGATGAGAAACCTGTTCCAAAGGCTGCTGCTCCTGCTAAAAACACCCCAGCTAAAAATGGGAGTGTGAAGAAAGCTGCCAAGCCAGTTTCTAGTTCCAGCTCAGATGATTCCGACGAGGATGACTCTTCCGAAGAGGAAAAAGCTAGTTCAAAGAAGCCAACTAAAGTTGAGGCTTCTAAGGCTATTAAGGTGGTGCCAAAGAAGGAGGAAAGTTCCGATGATTCAGAAGATGATTCTTCTGAAGATGAGAAACCTGCTGCTAAAGCTGTTCCTTCTAAAAATGTGAGTGCTCCTGCAAAGAAAGCAGCTAGTTCTTCTGATGATGACTCTTCCGATGAAGACTCTGATGAAGATGAAGCTCCAAAGCCGAAGGCTGCCCCTGCTGCAGCCAAGAACGGATCTGTTCCTGCAAAGAAGCCAGCTGAAAGCTCTGAATCTGATAGCTCGGATTCTGAGTCTGATGATGACAAGAATAAGAAAAAACCTGCAGCTACTGTCCCCAAAACTGAAAGCTCAGATGATGATTCAAGTGAGGAAAGCTCTGATGAAGAGGATACAAAGCCTGCCCCACCTGCTAAGTCTGCTGCTGTTGCAAAGAAGAATGAGGAAGATAGCTCAGATTCTGATGAGGATAGCAGCTCTGATGAAGACAATAAAACCAAAAATGTATCTAATGGAAACAAGAAACCCGTGTCTGCTGCTAAGAAAGAGGATAAAATGGAAGTTGACAATGATGATAGCAGTGATAGTTCTGATGACAGTGAGGAGAGTGAGGATGAACCAGCCAAAACTCCTCAGAAAAAGGTCAAAGATGTGGAGATGGTTGATGCTAACAAATCTGCAAAAAAAGCTCCTACTACCCCGGCTACACCCAATGAGAATGGCGGTTCAAAGACATTGTTTTGTGGAAACTTGGCATTTAGTGTGCAGCGATCTGATATAGAAAATTTCTTCCAAGAATGTGGAGAGGTTGTTGATGTCCGTCTTGCTAATGATGAGGATGGAAGGTTCAAAGGATTTGGACATGTTGAGTTTGCAACTGCAGAGGCTGCCCAAAGTGCACTTGAGTTGAATGGGCAAGAATTGTTGGGACGTGGTCTCCGACTAGATTTAGCTCGGGAGAGGGGGGCTTATACTCCTAATAATAACAGCAACTACTCAGCCCAAAGCGGTGGAAGAGGCCAATCTCAAACAATATTTGTCAGGGGTTTTGATAAAAATCTAGGGGAGGATGAGATAAGATCAAAATTGGAACAGCATTTTGGCTCTTGTGGGGAAGTTACAAGAGTGTCAATCCCCAAAGATTTTGATTCTGGTTATGTCAAGGGGTTTGCATACATGGACTTCAAAGATCCAGACAGCAAGAACAAAGCTTTAGAACTCCATGAGAGCGAACTTGAAGGTTATACTTTGTCAGTTGATGAAGCCAAACCTAGAGATAGCCAGGGATCCGGAGGAAGGGGATTTGGTGGAAGGGATAGTGGCGGTAGAGGAAGAGGAGGTCGATTTGGTGGAAGGGATAGTGGCGGTAGAAGAGGAGGTCGATTTGGTGGAAGGGATAGTGGTAGAGGAGGAAGGAATAGTGGTGGCCGAGGATTCAAACCAAGCTTTTCTTCACAAGGAAAGAAGACAACTTTTGGTGACGACTAG 1878 0.4452 MAKTSNKSATKVEDAPVVVSPAKSGKKGKRQAEEEVNAVSAKKQKLEEVKQKKEAELKKVKKVESSSEEDSSDESEDEKPVPKAAAPAKNTPAKNGSVKKAAKPVSSSSSDDSDEDDSSEEEKASSKKPTKVEASKAIKVVPKKEESSDDSEDDSSEDEKPAAKAVPSKNVSAPAKKAASSSDDDSSDEDSDEDEAPKPKAAPAAAKNGSVPAKKPAESSESDSSDSESDDDKNKKKPAATVPKTESSDDDSSEESSDEEDTKPAPPAKSAAVAKKNEEDSSDSDEDSSSDEDNKTKNVSNGNKKPVSAAKKEDKMEVDNDDSSDSSDDSEESEDEPAKTPQKKVKDVEMVDANKSAKKAPTTPATPNENGGSKTLFCGNLAFSVQRSDIENFFQECGEVVDVRLANDEDGRFKGFGHVEFATAEAAQSALELNGQELLGRGLRLDLARERGAYTPNNNSNYSAQSGGRGQSQTIFVRGFDKNLGEDEIRSKLEQHFGSCGEVTRVSIPKDFDSGYVKGFAYMDFKDPDSKNKALELHESELEGYTLSVDEAKPRDSQGSGGRGFGGRDSGGRGRGGRFGGRDSGGRRGGRFGGRDSGRGGRNSGGRGFKPSFSSQGKKTTFGDD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02520 625 MobiDBLite consensus disorder prediction 1 372 - -
Trre7g02520 625 Coils Coil 29 66 - -
Trre7g02520 625 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 493 606 - -
Trre7g02520 625 SUPERFAMILY RNA-binding domain, RBD 472 586 IPR035979 GO:0003676
Trre7g02520 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 443 IPR000504 GO:0003723
Trre7g02520 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 482 547 IPR000504 GO:0003723
Trre7g02520 625 Gene3D - 307 456 IPR012677 -
Trre7g02520 625 MobiDBLite consensus disorder prediction 608 625 - -
Trre7g02520 625 FunFam Nucleolin 2 349 458 - -
Trre7g02520 625 MobiDBLite consensus disorder prediction 580 595 - -
Trre7g02520 625 CDD RRM2_NUCLs 474 552 IPR034350 -
Trre7g02520 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 450 IPR000504 GO:0003723
Trre7g02520 625 SMART rrm1_1 474 550 IPR000504 GO:0003723
Trre7g02520 625 SMART rrm1_1 375 446 IPR000504 GO:0003723
Trre7g02520 625 MobiDBLite consensus disorder prediction 336 354 - -
Trre7g02520 625 Gene3D - 457 571 IPR012677 -
Trre7g02520 625 MobiDBLite consensus disorder prediction 26 68 - -
Trre7g02520 625 SUPERFAMILY RNA-binding domain, RBD 365 471 IPR035979 GO:0003676
Trre7g02520 625 MobiDBLite consensus disorder prediction 228 250 - -
Trre7g02520 625 MobiDBLite consensus disorder prediction 545 625 - -
Trre7g02520 625 MobiDBLite consensus disorder prediction 320 335 - -
Trre7g02520 625 MobiDBLite consensus disorder prediction 120 149 - -
Trre7g02520 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 473 554 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02520 Trre-Chr7 20710496 20714873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02520 372 547 Eukaryotic Initiation Factors Gene Family AT4G34110 29.213 5.74e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02520 K11294 - gmx:100779929 395.971