Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02519 ATGGCCAAGACAAGCAATAAATCCGCCACTAAGGTTGAAGATGCTCCTGTTGTTGTTTCTCCAGCCAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGTGAATGCAGTGAGTGCAAAGAAGCAAAAGTTAGAAGAGGTTAAGCAAAAGAAGGAAGCTGAGTTGAAGAAAGTTAAGAAGGTGGAAAGTAGTTCAGAGGAAGATTCATCTGATGAGTCTGAGGATGAGAAACCTGTTCCAAAGGCTGCTGCTCCTGCTAAAAACACCCCAGCTAAAAATGGGAGTGTGAAGAAAGCTGCCAAGCCAGTTTCTAGTTCCAGCTCAGATGATTCCGACGAGGATGACTCTTCCGAAGAGGAAAAAGCTAGTTCAAAGAAGCCAACTAAAGTTGAGGCTTCTAAGGCTATTAAGGTGGTGCCAAAGAAGGAGGAAAGTTCCGATGATTCAGAAGATGATTCTTCTGAAGATGAGAAACCTGCTGCTAAAGCTGTTCCTTCTAAAAATGTGAGTGCTCCTGCAAAGAAAGCAGCTAGTTCTTCTGATGATGACTCTTCCGATGAAGACTCTGATGAAGATGAAGCTCCAAAGCCGAAGGCTGCCCCTGCTGCAGCCAAGAACGGATCTGTTCCTGCAAAGAAGCCAGCTGAAAGCTCTGAATCTGATAGCTCGGATTCTGAGTCTGATGATGACAAGAATAAGAAAAAACCTGCAGCTACTGTCCCCAAAACTGAAAGCTCAGATGATGATTCAAGTGAGGAAAGCTCTGATGAAGAGGATACAAAGCCTGCCCCACCTGCTAAGTCTGCTGCTGTTGCAAAGAAGAATGAGGAAGATAGCTCAGATTCTGATGAGGATAGCAGCTCTGATGAAGACAATAAAACCAAAAATGTATCTAATGGAAACAAGAAACCCGTGTCTGCTGCTAAGAAAGAGGTTAGTGAATCAGAGAGTGATTCCTCTGATGACGAGGATAAAATGGAAGTTGACAATGATGATAGCAGTGATAGTTCTGATGACAGTGAGGAGAGTGAGGATGAACCAGCCAAAACTCCTCAGAAAAAGGTCAAAGATGTGGAGATGGTTGATGCTAACAAATCTGCAAAAAAAGCTCCTACTACCCCGGCTACACCCAATGAGAATGGCGGTTCAAAGACATTGTTTTGTGGAAACTTGGCATTTAGTGTGCAGCGATCTGATATAGAAAATTTCTTCCAAGAATGTGGAGAGGTTGTTGATGTCCGTCTTGCTAATGATGAGGATGGAAGGTTCAAAGGATTTGGACATGTTGAGTTTGCAACTGCAGAGGCTGCCCAAAGTGCACTTGAGTTGAATGGGCAAGAATTGTTGGGACGTGGTCTCCGACTAGATTTAGCTCGGGAGAGGGGGGCTTATACTCCTAATAATAACAGCAACTACTCAGCCCAAAGCGGTGGAAGAGGCCAATCTCAAACAATATTTGTCAGGGGTTTTGATAAAAATCTAGGGGAGGATGAGATAAGATCAAAATTGGAACAGCATTTTGGCTCTTGTGGGGAAGTTACAAGAGTGTCAATCCCCAAAGATTTTGATTCTGGTTATGTCAAGGGGTTTGCATACATGGACTTCAAAGATCCAGACAGCAAGAACAAAGCTTTAGAACTCCATGAGAGCGAACTTGAAGGTTATACTTTGTCAGTTGATGAAGCCAAACCTAGAGATAGCCAGGGATCCGGAGGAAGGGGATTTGGTGGAAGGGATAGTGGCGGTAGAGGAAGAGGAGGTCGATTTGGTGGAAGGGATAGTGGCGGTAGAAGAGGAGGTCGATTTGGTGGAAGGGATAGTGGTAGAGGAGGAAGGAATAGTGGTGGCCGAGGATTCAAACCAAGCTTTTCTTCACAAGGAAAGAAGACAACTTTTGGTGACGACTAG 1914 0.4451 MAKTSNKSATKVEDAPVVVSPAKSGKKGKRQAEEEVNAVSAKKQKLEEVKQKKEAELKKVKKVESSSEEDSSDESEDEKPVPKAAAPAKNTPAKNGSVKKAAKPVSSSSSDDSDEDDSSEEEKASSKKPTKVEASKAIKVVPKKEESSDDSEDDSSEDEKPAAKAVPSKNVSAPAKKAASSSDDDSSDEDSDEDEAPKPKAAPAAAKNGSVPAKKPAESSESDSSDSESDDDKNKKKPAATVPKTESSDDDSSEESSDEEDTKPAPPAKSAAVAKKNEEDSSDSDEDSSSDEDNKTKNVSNGNKKPVSAAKKEVSESESDSSDDEDKMEVDNDDSSDSSDDSEESEDEPAKTPQKKVKDVEMVDANKSAKKAPTTPATPNENGGSKTLFCGNLAFSVQRSDIENFFQECGEVVDVRLANDEDGRFKGFGHVEFATAEAAQSALELNGQELLGRGLRLDLARERGAYTPNNNSNYSAQSGGRGQSQTIFVRGFDKNLGEDEIRSKLEQHFGSCGEVTRVSIPKDFDSGYVKGFAYMDFKDPDSKNKALELHESELEGYTLSVDEAKPRDSQGSGGRGFGGRDSGGRGRGGRFGGRDSGGRRGGRFGGRDSGRGGRNSGGRGFKPSFSSQGKKTTFGDD 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02519 637 SUPERFAMILY RNA-binding domain, RBD 484 598 IPR035979 GO:0003676
Trre7g02519 637 Coils Coil 29 66 - -
Trre7g02519 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 485 566 IPR000504 GO:0003723
Trre7g02519 637 MobiDBLite consensus disorder prediction 1 384 - -
Trre7g02519 637 MobiDBLite consensus disorder prediction 319 347 - -
Trre7g02519 637 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 505 618 - -
Trre7g02519 637 MobiDBLite consensus disorder prediction 620 637 - -
Trre7g02519 637 Gene3D - 307 468 IPR012677 -
Trre7g02519 637 SMART rrm1_1 486 562 IPR000504 GO:0003723
Trre7g02519 637 SMART rrm1_1 387 458 IPR000504 GO:0003723
Trre7g02519 637 MobiDBLite consensus disorder prediction 592 607 - -
Trre7g02519 637 CDD RRM2_NUCLs 486 564 IPR034350 -
Trre7g02519 637 Gene3D - 469 584 IPR012677 -
Trre7g02519 637 SUPERFAMILY RNA-binding domain, RBD 377 483 IPR035979 GO:0003676
Trre7g02519 637 MobiDBLite consensus disorder prediction 348 366 - -
Trre7g02519 637 MobiDBLite consensus disorder prediction 26 68 - -
Trre7g02519 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 386 462 IPR000504 GO:0003723
Trre7g02519 637 MobiDBLite consensus disorder prediction 228 250 - -
Trre7g02519 637 MobiDBLite consensus disorder prediction 557 637 - -
Trre7g02519 637 MobiDBLite consensus disorder prediction 120 149 - -
Trre7g02519 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 494 559 IPR000504 GO:0003723
Trre7g02519 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 388 455 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02519 Trre-Chr7 20710496 20714873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02519 384 559 Eukaryotic Initiation Factors Gene Family AT4G34110 29.213 7.33e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02519 K11294 - gmx:100786132 392.119